Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq1022 113 7e-20 seq509 113 7e-20 seq61 100 4e-16 seq1102 95.1 2e-14 seq687 87.8 3e-12 seq1759 84.2 3e-11 >seq1022 Length=319891 Score = 113 bits (124), Expect = 7e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 |||||||| ||||| ||||| |||| || | ||| || || || || || ||||| Sbjct 175732 GTTCCACCCCTAAGCCTTAAAACCAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAATCA 175673 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | || ||||| | ||| || |||||||| ||||||||||||||||| |||||||| ||| Sbjct 175672 GCCAGGGTTCTACCATCTTCCAATTGTTTACCAGCAAAAATCAATCTCTGCTGATCAGGA 175613 Query 146168 GGAATTCCTTCTTTATCTTG 146187 ||||| ||||| || || || Sbjct 175612 GGAATGCCTTCCTTGTCCTG 175593 >seq509 Length=920718 Score = 113 bits (124), Expect = 7e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| |||||||| || || |||| || | ||| || || || || || ||||| Sbjct 59935 GTTCCTCCTCTAAGCCTCAAAACCAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAATCA 59876 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 ||||| ||||| | ||| || |||||||| ||||||||||| ||||| |||||||| ||| Sbjct 59875 GAAAGGGTTCTACCATCTTCCAATTGTTTCCCAGCAAAAATTAATCTCTGCTGATCAGGA 59816 Query 146168 GGAATTCCTTCTTTATCTTG 146187 ||||| ||||| || || || Sbjct 59815 GGAATGCCTTCCTTGTCCTG 59796 Score = 113 bits (124), Expect = 7e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| |||||||| || || |||| || | ||| || || || || || ||||| Sbjct 62376 GTTCCTCCTCTAAGCCTCAAAACCAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAATCA 62317 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 ||||| ||||| | ||| || |||||||| ||||||||||| ||||| |||||||| ||| Sbjct 62316 GAAAGGGTTCTACCATCTTCCAATTGTTTCCCAGCAAAAATTAATCTCTGCTGATCAGGA 62257 Query 146168 GGAATTCCTTCTTTATCTTG 146187 ||||| ||||| || || || Sbjct 62256 GGAATGCCTTCCTTGTCCTG 62237 >seq61 Length=2804743 Score = 100 bits (110), Expect = 4e-16 Identities = 142/208 (68%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 146070 CCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTA 146129 ||||||||||||| ||||| || ||||||||||| | | || | || ||| || | Sbjct 1593092 CCAAATGTAAAGTTGATTCCTTTTGGATATTATAATCAGCCAACGTACGGCCATCTTCAA 1593033 Query 146130 ATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGNN 146189 ||||| |||||||| || ||||| |||||||| || || ||||| ||||| ||||| Sbjct 1593032 TCTGTTTACCAGCAAAGATTAATCTCTGCTGATCTGGCGGGATTCCCTCTTTGTCTTGAA 1592973 Query 146190 NNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTAC 146249 || || ||||| |||||||| | ||||| ||||| | Sbjct 1592972 TTTTTGCCTTCACATTGTCTATGGTGTCCGAACTCTCTACTTCCAACGTGATGGTTTTCC 1592913 Query 146250 CTGTTAATGTTTTAATGAATATTTGCAT 146277 | || | |||||| | ||||||||||| Sbjct 1592912 CAGTGAGTGTTTTCACAAATATTTGCAT 1592885 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| |||| | |||||||||||||| |||| || || ||||| || | | Sbjct 1592883 CCACCTCTTAGTCGAAGAACCAAATGTAAAGTGGATTGCTTCCGGATGTTATAGTCAGCA 1592824 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| || | ||| || | || ||||||||||| ||||| || ||||| | || ||| Sbjct 1592823 AGAGTCCTCCCATCTTCAAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGCCAGGTGGA 1592764 Query 146171 ATTCCTTCTTTATCTTG 146187 || || || || || || Sbjct 1592763 ATGCCCTCCTTGTCCTG 1592747 >seq1102 Length=274024 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 |||| || ||||| || || |||| || | || || || || || |||||||| Sbjct 102036 GTTCTTCCCCTAAGCCTCAAAACCAGGTGAAGTGTTGACTCCTTCTGGATGTTATAATCA 101977 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | |||||||| || ||| || ||||| || ||||||||||| ||||| ||||| || ||| Sbjct 101976 GCAAGAGTTCGGCCATCTTCCAATTGCTTACCAGCAAAAATTAATCTCTGCTGGTCAGGA 101917 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || ||||| ||||| || Sbjct 101916 GGGATCCCTTCCTTATCCTG 101897 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || ||||| || | |||| || | || || || || || |||||||| Sbjct 97752 GTTCCTCCCCTAAGCCTCAGAACCAGGTGAAGTGTTGACTCCTTCTGGATGTTATAATCA 97693 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||||||| || ||| || ||||| || ||||||||||| ||||| ||||| || ||| Sbjct 97692 GCAAGAGTTTGGCCATCTTCCAATTGCTTACCAGCAAAAATTAATCTCTGCTGGTCAGGA 97633 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || ||||| ||||| || Sbjct 97632 GGGATCCCTTCCTTATCCTG 97613 >seq687 Length=650195 Score = 87.8 bits (96), Expect = 3e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 146075 TGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGT 146134 || |||||||| || || ||||| ||||| | ||| || || | ||| || | || Sbjct 287663 TGCAAAGTAGACTCCTTCTGGATATTGTAATCAGCAAGGGTCCTCCCATCCTCAAGCTGC 287604 Query 146135 TTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||||||||||||||| |||||||| || || |||||||| || || || Sbjct 287603 TTTCCAGCAAAAATCAATCTCTGCTGATCTGGTGGGATTCCTTCCTTGTCCTG 287551 >seq1759 Length=69365 Score = 84.2 bits (92), Expect = 3e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 146074 ATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTG 146133 ||| || || ||||| || |||||||||||| | ||| || |||| ||| || | ||| Sbjct 30490 ATGCAAGGTGGATTCCTTCTGTATATTATAATCAGCAAGGGTCCTGCCATCCTCCAGTTG 30549 Query 146134 TTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| || ||||| | |||||| || ||||| || ||||| || || || Sbjct 30550 CTTTCCAGCGAAGATCAAGCGTTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTG 30603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743457140515840