Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq46 109 4e-19 seq2791 98.7 8e-16 seq1725 98.7 8e-16 seq153 84.2 2e-11 >seq46 Length=2947087 Score = 109 bits (120), Expect = 4e-19 Identities = 98/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || || || || || ||| |||||||| |||||||||||||| ||||| ||||| ||| Sbjct 704925 CAGTTCTATGTAGCCAATGGGGAATTGTCCTGTCAAATGTATCAGCGATCTGCTGACATG 704984 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || |||||||| || ||||| |||||| |||||| || ||||| | |||||||| || Sbjct 704985 GGCCTGGGTGTGCCATTCAACATTGCATCTTATGCCCTCCTTACATGCATGATTGCTCAC 705044 Query 20551 GTT 20553 ||| Sbjct 705045 GTT 705047 >seq2791 Length=22307 Score = 98.7 bits (108), Expect = 8e-16 Identities = 83/102 (81%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 20452 GAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAAT 20511 || || || |||||||||||||||||||| || |||||||| |||||||| || ||||| Sbjct 16271 GAGTTATCTTGTCAAATGTATCAACGATCTGCCGATATGGGCCTGGGTGTGCCATTCAAC 16330 Query 20512 ATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTT 20553 |||||| |||||| || | || | |||||||| |||||| Sbjct 16331 ATTGCATCTTATGCCCTCTTGACATGCATGATTGCTCATGTT 16372 >seq1725 Length=72912 Score = 98.7 bits (108), Expect = 8e-16 Identities = 83/102 (81%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 20452 GAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAAT 20511 || || || |||||||||||||||||||| || |||||||| |||||||| || ||||| Sbjct 19741 GAGTTATCTTGTCAAATGTATCAACGATCTGCCGATATGGGCCTGGGTGTGCCATTCAAC 19800 Query 20512 ATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTT 20553 |||||| |||||| || | || | |||||||| |||||| Sbjct 19801 ATTGCATCTTATGCCCTCTTGACATGCATGATTGCTCATGTT 19842 >seq153 Length=1958124 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/123 (76%), Gaps = 1/123 (1%) Strand=Plus/Minus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || ||||| || || ||| || || | |||||||||||||| || || ||||||||| Sbjct 333179 CAGTTTTATGTGGCCAATGGGGAGTTACC-TGTCAAATGTATCAGCGCTCTGCTGATATG 333121 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || || || || || || || |||||| |||||| |||| || | |||||||| ||| Sbjct 333120 GGTCTTGGAGTCCCATTTAACATTGCATCTTATGCTTTGCTGACTTGCATGATTGCTCAT 333061 Query 20551 GTT 20553 ||| Sbjct 333060 GTT 333058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399147745610140