Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq1752 131 2e-25 >seq1752 Length=70440 Score = 131 bits (144), Expect = 2e-25 Identities = 379/570 (66%), Gaps = 25/570 (4%) Strand=Plus/Plus Query 14201 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 14260 |||||||| || ||||| || | ||||||||||| || | |||||||| |||||| Sbjct 24529 AAACACGCGAAGTCACAGTGCAAGCCCTCATCTCGCGAGATCAACTCGTTTGAGAATGTT 24588 Query 14261 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATG-ATCCGGAAAA 14319 ||||| |||||||| || || || |||| ||||||||| || || || | ||| ||||| Sbjct 24589 AATCCCGGCATCAAGCCACGCTTCTTTAGCCAAAATATCGC-GCAAAAGCTTCCAGAAAA 24647 Query 14320 GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTT 14379 ||||||||||| || ||||| || || | | || |||| | | | | Sbjct 24648 AAATATTCCCTCCACACAGGCAAAAGCGATCAGCCTCTCCGCAAAAG-----TCTCCGAA 24702 Query 14380 CGAT--ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATA 14437 | || ||||| | ||||| |||| |||||| | | || | || ||||| Sbjct 24703 CCATCGATCCACCTGAGGGCCCACTCAGCTTTTTTAGCCACACAAGGGACAGTCTCAATT 24762 Query 14438 GCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTAT-CAATAAGTAAG-C 14495 |||| ||| || | | |||||| || | | | ||| || || | ||| || ||| | Sbjct 24763 GCATGAAACAAGCGATTCTTCTCGTTGGAATCTTTAATATAAGTCTCCAACAA--AAGAC 24820 Query 14496 TATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTT 14555 | ||||| || || || || ||||| ||||| || || || ||||| ||| | ||| | Sbjct 24821 TGTACATCTCGGAATGGATATTTTCAATAGCGATTTGGAATCCATAGAAAGCACGAGCCT 24880 Query 14556 CTG--ACCATTGTACCT-CTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCAT 14612 | | ||| || || | || ||||| | | | || | ||||| ||| ||||||| Sbjct 24881 CAGCAACC--TGGACTTCCTTCATAAAA-CGTCCAGCGAGGTTTTCGAGAACGATACCAT 24937 Query 14613 CACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTG---CTGA 14669 | || ||||| ||||| | | | | | |||| |||| ||||| | | | Sbjct 24938 CGGAGGCGGCAAAGAATGCAAGAACATGGGTGACAAAG---TGCTTTTCATCGGGTGTTA 24994 Query 14670 GTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAG 14729 | || ||| | | | ||| | ||| ||||| || || ||| | |||||||| | Sbjct 24995 GGGCTTCCCAGTGGCGGAGATCTTGAGAGAGATCGACCTCCTCAGCAGTCCAAAAGGAGG 25054 Query 14730 CAACAGCTTTTTTATACATTACCCATATTT 14759 | | ||||| ||||||||| |||| |||| Sbjct 25055 CCTCGGCTTTCTTATACATTTCCCAGATTT 25084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482300669507360