Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01]
7,452 sequences; 1,373,365,927 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq1022 91.5 1e-13
seq68 87.8 1e-12
seq1102 82.4 6e-11
seq509 82.4 6e-11
>seq1022
Length=319891
Score = 91.5 bits (100), Expect = 1e-13
Identities = 101/135 (75%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
||| |||| || || | |||| |||||| ||||| || || || |||||||| || ||
Sbjct 175730 TCCACCCCTAAGCCTTAAAACCAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAATCAGC 175671
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
|| ||| ||| ||||||||||||||| || ||| | || | ||| || ||||| ||
Sbjct 175670 CAGGGTTCTACCATCTTCCAATTGTTTACCAGCAAAAATCAATCTCTGCTGATCAGGAGG 175611
Query 18218 CACGCCTTCCTTATC 18232
| ||||||||| ||
Sbjct 175610 AATGCCTTCCTTGTC 175596
>seq68
Length=2695109
Score = 87.8 bits (96), Expect = 1e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
||| || || |||| |||||||| ||| || || || || ||||| ||||||||||||||
Sbjct 1665292 TCCACCTCGGAGTCGAAGTACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGC 1665351
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
| || | ||| || | || || || ||| ||||||| || || ||||| |||
Sbjct 1665352 AAGCGTGCGCCCATCCTCAAGCTGCTTCCCAGCAAAGATAAGCCTCTGCTGATCTGGGGG 1665411
Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277
| ||| ||||| || || | ||| || | ||| |||||| | |||
Sbjct 1665412 AATGCCCTCCTTGTCCTGGATCTTGGCCTTAACATTATCAATGGTGTCAGAGCTCTCAAC 1665471
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
||| | ||| ||| | || || ||||| || || ||||| || |||||
Sbjct 1665472 TTCCAAGGTTATGGTCTTTCCAGTCAAAGTCTTCACAAAGATCTGCAT 1665519
>seq1102
Length=274024
Score = 82.4 bits (90), Expect = 6e-11
Identities = 99/135 (73%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
|||||||| || || || |||| |||||||||||| || || || ||||| || || ||
Sbjct 97750 TCCTCCCCTAAGCCTCAGAACCAGGTGAAGTGTTGACTCCTTCTGGATGTTATAATCAGC 97691
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
| |||| | |||||||||||| || || ||| | || | ||| || || || ||
Sbjct 97690 AAGAGTTTGGCCATCTTCCAATTGCTTACCAGCAAAAATTAATCTCTGCTGGTCAGGAGG 97631
Query 18218 CACGCCTTCCTTATC 18232
| |||||||||||
Sbjct 97630 GATCCCTTCCTTATC 97616
>seq509
Length=920718
Score = 82.4 bits (90), Expect = 6e-11
Identities = 99/135 (73%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
|||||| | || || | |||| |||||| ||||| || || || |||||||| || |
Sbjct 59933 TCCTCCTCTAAGCCTCAAAACCAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAATCAGA 59874
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
| ||| ||| ||||||||||||||| || ||| | || | ||| || ||||| ||
Sbjct 59873 AAGGGTTCTACCATCTTCCAATTGTTTCCCAGCAAAAATTAATCTCTGCTGATCAGGAGG 59814
Query 18218 CACGCCTTCCTTATC 18232
| ||||||||| ||
Sbjct 59813 AATGCCTTCCTTGTC 59799
Score = 82.4 bits (90), Expect = 6e-11
Identities = 99/135 (73%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
|||||| | || || | |||| |||||| ||||| || || || |||||||| || |
Sbjct 62374 TCCTCCTCTAAGCCTCAAAACCAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAATCAGA 62315
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
| ||| ||| ||||||||||||||| || ||| | || | ||| || ||||| ||
Sbjct 62314 AAGGGTTCTACCATCTTCCAATTGTTTCCCAGCAAAAATTAATCTCTGCTGATCAGGAGG 62255
Query 18218 CACGCCTTCCTTATC 18232
| ||||||||| ||
Sbjct 62254 AATGCCTTCCTTGTC 62240
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379309547503740
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |