Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1752 242 5e-59 seq79 111 2e-19 seq755 87.8 2e-12 >seq1752 Length=70440 Score = 242 bits (268), Expect = 5e-59 Identities = 423/611 (69%), Gaps = 6/611 (1%) Strand=Plus/Plus Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637 |||||| ||||| || ||||||| ||||| |||| || || ||||| || || || Sbjct 24528 CAAACACGCGAAGTCACAGTGCAAGCCCTCATCTCGCGAGATCAACTCGTTTGAGAATGT 24587 Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATG-ATCCGGAAA 33696 | ||| ||||| | ||||||||| || ||||||||||| | || || | ||| |||| Sbjct 24588 TAATCCCGGCATCAAGCCACGCTTCTTTAGCCAAAATATCG-CGCAAAAGCTTCCAGAAA 24646 Query 33697 AGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG--TC 33754 | || ||||| || || ||||| || || || ||||| || || | | | | | Sbjct 24647 AAAATATTCCCTCCACACAGGCAAAAGCGATCAGCCTCTCCGCAAAA--GTCTCCGAACC 24704 Query 33755 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33814 || |||||| | | ||||| || || || || |||||||| | || || || || Sbjct 24705 ATCGATCCACCTGAGGGCCCACTCAGCTTTTTTAGCCACACAAGGGACAGTCTCAATTGC 24764 Query 33815 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33874 || ||| | || || || || |||||||| |||||| || | ||||||||| || Sbjct 24765 ATGAAACAAGCGATTCTTCTCGTTGGAATCTTTAATATAAGTCTCCAACAAAAGACTGTA 24824 Query 33875 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33934 ||| || ||||| || |||||||| || || || ||||| |||||| | |||||| | Sbjct 24825 CATCTCGGAATGGATATTTTCAATAGCGATTTGGAATCCATAGAAAGCACGAGCCTCAGC 24884 Query 33935 AATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGC 33994 || ||| ||||| | ||| ||| | || | ||||| || || ||||| ||| Sbjct 24885 AACCTGGACTTCCTTCATAAAACGTCCAGCGAGGTTTTCGAGAACGATACCATCGGAGGC 24944 Query 33995 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCA 34054 ||||| || || | ||||| | | ||| | ||||| || |||||||| | ||| Sbjct 24945 GGCAAAGAATGCAAGAACATGGGTGACAAAGTGCTTTTCATCGGGTGTTAGGGCTTCCCA 25004 Query 34055 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 34114 | || ||||| ||| | ||| || || || | |||||||| || ||||| || || Sbjct 25005 GTGGCGGAGATCTTGAGAGAGATCGACCTCCTCAGCAGTCCAAAAGGAGGCCTCGGCTTT 25064 Query 34115 TTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 34174 |||||||| | |||||| | | |||| |||||||| ||| || | || || || Sbjct 25065 CTTATACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAAACGATCTGAGTT 25124 Query 34175 TGGTGCAAGGA 34185 ||| ||||||| Sbjct 25125 TGGGGCAAGGA 25135 >seq79 Length=2571107 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 ||||| ||||| || | ||| ||||||||||| || |||||| | ||| | | || Sbjct 116813 GTTCCAGCATTGAAAAGGGTGGGAGAAGCGTGTGTGAACCATCGCTGAGACATCAAATGA 116872 Query 63723 TACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAA 63781 || || |||||| | || || ||||| | ||| |||||||| || || || | ||||| Sbjct 116873 TAGGTTTCAATAACCGAATCAATATCATCCTTG-TGAATTCCAACAGCAACCCTCATTAG 116931 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 ||||||||||||||| || |||| || | | ||| || | |||||| |||||| Sbjct 116932 CATGTGCTGAGGTCTCTCCACAACCTTCCCTTGAACTTTTAAGAGGTAGGACCTTTCCAG 116991 Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 || ||||| ||||| || | || ||||| || || ||||| || Sbjct 116992 GGTCTTAAAGCCAAAGTAATCATAGTTGAAGTCCCGATCATAAATGAT 117039 Score = 86.0 bits (94), Expect = 8e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 |||||| ||||| | || | || || | ||| | || | ||||| |||| |||||| Sbjct 116399 TCCTCCTTGATCAACATAACGGGCAGTATCATTGAACACCCGTAACATGGGAACAATACC 116458 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 || ||| | ||||| || || |||||||| ||| | ||||||||||| ||| || Sbjct 116459 ATTAGATGTCCCATTTGTTCCACGAATATAGCCGCCAGTAGCACGAATATTGTGAATAGA 116518 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 | || ||||| || || ||| ||| | || || || || || ||||| || Sbjct 116519 GACGCCAATTCCTCCAGCAGATTTGCTGATAACAGCACACTCCTTCAAAGTATCATATAT 116578 Query 63602 GCCTTCTATGCTATCATCGATCATG 63626 |||||| || |||||||| ||||| Sbjct 116579 GCCTTCAATACTATCATCTTTCATG 116603 >seq755 Length=570705 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 ||||| |||||||| | ||| || || || || || |||||| || ||| | | || | Sbjct 116815 GTTCCAGCATTAAAAAGGGTGGGCGATGCATGAGTGAACCATCGTTGAGACATCAAATGG 116874 Query 63723 TACGTCTCAATAGCTGAGTCTATATC--CCATTGATGAATTCCTACTGCGACACGCATTA 63780 || || | ||| | || || ||||| |||| |||||||| || || || | ||| | Sbjct 116875 TAGGTTTTGATAACAGAATCAATATCATCCATG--TGAATTCCAACAGCAACTCTCATCA 116932 Query 63781 ACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63840 ||||||||||||||| || || | || | | ||| || | ||||| ||||| Sbjct 116933 GCATGTGCTGAGGTCTCTCTACTACCTTCCCTTGCACTTTTAAGAGATAGGACCGTTCCA 116992 Query 63841 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 | || || || ||||| || | || |||||| || || ||||| || Sbjct 116993 AGGTCTTGAAGCCAAAGTAATCATAGTCAAAGTCCCGATCATAAATGAT 117041 Score = 82.4 bits (90), Expect = 1e-10 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 |||||| ||||| | || | || || | ||| | || | ||||| |||| ||| || Sbjct 116405 TCCTCCTTGATCAACATACCGTGCAGTATCATTGAACACACGTAACATGGGAACAATGCC 116464 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 || ||| | ||||| || || ||||| | ||| | ||||||||||| || || Sbjct 116465 ATTAGATGTCCCATTTGTTCCACGAATATAACTACCAGTAGCACGAATATTGTGAACGGA 116524 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 | ||| ||||| ||||| |||| ||| | || || || || || ||||| || Sbjct 116525 GACACCAATTCCTCCTGCAGATTTACTGATAACAGCACACTCCTTCAAAGTATCATATAT 116584 Query 63602 GCCTTCTATGCTATCATCGATCATG 63626 |||||| || |||||||| ||||| Sbjct 116585 GCCTTCAATACTATCATCTTTCATG 116609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629758932490560