Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1752 159 3e-34 >seq1752 Length=70440 Score = 159 bits (176), Expect = 3e-34 Identities = 387/581 (67%), Gaps = 4/581 (1%) Strand=Plus/Plus Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686 |||||||| || ||||| || || || || |||| || | || || || |||||| Sbjct 24529 AAACACGCGAAGTCACAGTGCAAGCCCTCATCTCGCGAGATCAACTCGTTTGAGAATGTT 24588 Query 11687 AATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATG-AACCAGAAAA 11745 ||||| |||||||| || || || |||| ||||||||| || ||||| | |||||||| Sbjct 24589 AATCCCGGCATCAAGCCACGCTTCTTTAGCCAAAATATCGC-GCAAAAGCTTCCAGAAAA 24647 Query 11746 GAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGA 11805 ||||||||||||||| ||||| || | | || || || | || | | Sbjct 24648 AAATATTCCCTCCACACAGGCAAAAGCGATCAGCCTCTCCGCAAAAGTCTCCGAACCATC 24707 Query 11806 TATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTT 11865 ||||| | |||||| |||||||| || || || | || || || || | Sbjct 24708 GATCCACCTGAGGGCCCACTCAGCTTTTTTAGCCACACAAGGGACAGTCTCAATTGCATG 24767 Query 11866 AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACAT 11925 ||| || | | || || | |||| | | ||| || || | || | ||| ||||| Sbjct 24768 AAACAAGCGATTCTTCTCGTTGGAATCTTTAATATAAGTCTCCAACAAAAGACTGTACAT 24827 Query 11926 TTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACA 11985 || ||||| |||||||| ||||| ||||| |||||||||||| || ||||| | | Sbjct 24828 CTCGGAATGGATATTTTCAATAGCGATTTGGAATCCATAGAAAGCACGAGCCTCAGCAAC 24887 Query 11986 CTGTACATCC-ACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATG 12044 ||| || ||| ||||||| | | | || | || || || |||||||| | | Sbjct 24888 CTGGACTTCCTTCATAAAA-CGTCCAGCGAGGTTTTCGAGAACGATACCATCGGAGGCGG 24946 Query 12045 CAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAAT 12104 |||| ||||| || | ||| | | ||||| ||||| || |||| ||||| | Sbjct 24947 CAAAGAATGCAAGAACATGGGTGACAAAGTGCTTTTCATCGGGTGTTAGGGCTTCCCAGT 25006 Query 12105 CATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTT 12164 | ||||| || | ||| || || ||| | |||||||| ||| | | || | Sbjct 25007 GGCGGAGATCTTGAGAGAGATCGACCTCCTCAGCAGTCCAAAAGGAGGCCTCGGCTTTCT 25066 Query 12165 TATACATTTTCCAGATATCATGATACTTAATAGGGAAAATA 12205 ||||||||| |||||| | | || | ||| ||||| ||| Sbjct 25067 TATACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATA 25107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468481156914880