Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1752 237 2e-57 seq79 111 2e-19 seq755 100 4e-16 seq320 87.8 2e-12 >seq1752 Length=70440 Score = 237 bits (262), Expect = 2e-57 Identities = 405/583 (69%), Gaps = 6/583 (1%) Strand=Plus/Plus Query 36154 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 36213 |||||| ||||| || ||||| | ||||| |||| || || ||||| || || || Sbjct 24528 CAAACACGCGAAGTCACAGTGCAAGCCCTCATCTCGCGAGATCAACTCGTTTGAGAATGT 24587 Query 36214 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATG-ATCCAGAAA 36272 | ||| ||||| | ||||||||| || ||||||||||| | |||||| | |||||||| Sbjct 24588 TAATCCCGGCATCAAGCCACGCTTCTTTAGCCAAAATATCG-CGCAAAAGCTTCCAGAAA 24646 Query 36273 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG--TC 36330 | || ||||| || || ||||| || || || ||||| || || | | | | | Sbjct 24647 AAAATATTCCCTCCACACAGGCAAAAGCGATCAGCCTCTCCGCAAAA--GTCTCCGAACC 24704 Query 36331 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 36390 || |||||| | | ||||| || || || || |||||||| | ||||| || || Sbjct 24705 ATCGATCCACCTGAGGGCCCACTCAGCTTTTTTAGCCACACAAGGGACAGTCTCAATTGC 24764 Query 36391 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 36450 || ||| | || || || || |||||||| ||| || || | ||||||||| || Sbjct 24765 ATGAAACAAGCGATTCTTCTCGTTGGAATCTTTAATATAAGTCTCCAACAAAAGACTGTA 24824 Query 36451 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGT 36510 ||| || ||||| || |||||||| || ||||| ||||| |||||| | |||||| | Sbjct 24825 CATCTCGGAATGGATATTTTCAATAGCGATTTGGAATCCATAGAAAGCACGAGCCTCAGC 24884 Query 36511 AATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 36570 || ||| ||||| | ||| ||| | || | ||||| || || || || ||| Sbjct 24885 AACCTGGACTTCCTTCATAAAACGTCCAGCGAGGTTTTCGAGAACGATACCATCGGAGGC 24944 Query 36571 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCA 36630 ||||| || || | ||||| | | ||| | ||||| | |||||||| | ||| Sbjct 24945 GGCAAAGAATGCAAGAACATGGGTGACAAAGTGCTTTTCATCGGGTGTTAGGGCTTCCCA 25004 Query 36631 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 36690 | || ||||| ||| | ||| || || || | |||||||| || ||||| || || Sbjct 25005 GTGGCGGAGATCTTGAGAGAGATCGACCTCCTCAGCAGTCCAAAAGGAGGCCTCGGCTTT 25064 Query 36691 TTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 36733 |||||||| | |||||| | | |||| |||||| || ||| Sbjct 25065 CTTATACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATA 25107 >seq79 Length=2571107 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 ||||| ||||| || | ||| ||||||||||| || |||||| | ||| | | || Sbjct 116813 GTTCCAGCATTGAAAAGGGTGGGAGAAGCGTGTGTGAACCATCGCTGAGACATCAAATGA 116872 Query 66516 TACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAA 66574 || || |||||| | || || ||||| | ||| |||||||| || || || | ||||| Sbjct 116873 TAGGTTTCAATAACCGAATCAATATCATCCTTG-TGAATTCCAACAGCAACCCTCATTAG 116931 Query 66575 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 66634 ||||||||||||||| || || | ||| | | ||| || | |||||| |||||| Sbjct 116932 CATGTGCTGAGGTCTCTCCACAACCTTCCCTTGAACTTTTAAGAGGTAGGACCTTTCCAG 116991 Query 66635 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 66682 || ||||| ||||| || | || ||||| || || ||||| || Sbjct 116992 GGTCTTAAAGCCAAAGTAATCATAGTTGAAGTCCCGATCATAAATGAT 117039 Score = 95.1 bits (104), Expect = 2e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 |||||| ||||| | || | || || | ||| | || | ||||| |||| |||||| Sbjct 116399 TCCTCCTTGATCAACATAACGGGCAGTATCATTGAACACCCGTAACATGGGAACAATACC 116458 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 ||| ||||| ||||| || || ||||||| ||| | ||||||||||| ||| || Sbjct 116459 ATTAGATGTCCCATTTGTTCCACGAATATAGCCGCCAGTAGCACGAATATTGTGAATAGA 116518 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 | || ||||| || || ||| ||| | || || || || |||||||| || Sbjct 116519 GACGCCAATTCCTCCAGCAGATTTGCTGATAACAGCACACTCCTTCAAAGTATCATATAT 116578 Query 66395 GCCCTCTATACTATCATCCATCATG 66419 ||| || ||||||||||| ||||| Sbjct 116579 GCCTTCAATACTATCATCTTTCATG 116603 >seq755 Length=570705 Score = 100 bits (110), Expect = 4e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 |||||| ||||| | || | || || | ||| | || | ||||| |||| ||| || Sbjct 116405 TCCTCCTTGATCAACATACCGTGCAGTATCATTGAACACACGTAACATGGGAACAATGCC 116464 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 ||| ||||| ||||| || || ||||| || ||| | ||||||||||| || || Sbjct 116465 ATTAGATGTCCCATTTGTTCCACGAATATAACTACCAGTAGCACGAATATTGTGAACGGA 116524 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 | ||| ||||| ||||| |||| ||| | || || || || |||||||| || Sbjct 116525 GACACCAATTCCTCCTGCAGATTTACTGATAACAGCACACTCCTTCAAAGTATCATATAT 116584 Query 66395 GCCCTCTATACTATCATCCATCATG 66419 ||| || ||||||||||| ||||| Sbjct 116585 GCCTTCAATACTATCATCTTTCATG 116609 Score = 93.3 bits (102), Expect = 6e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 ||||| |||||||| | ||| || || || || || |||||| || ||| | | || | Sbjct 116815 GTTCCAGCATTAAAAAGGGTGGGCGATGCATGAGTGAACCATCGTTGAGACATCAAATGG 116874 Query 66516 TACGTCTCAATAGCTGAGTCTATATC--CCATTGATGAATTCCTACTGCGACACGCATTA 66573 || || | ||| | || || ||||| |||| |||||||| || || || | ||| | Sbjct 116875 TAGGTTTTGATAACAGAATCAATATCATCCATG--TGAATTCCAACAGCAACTCTCATCA 116932 Query 66574 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 66633 ||||||||||||||| || || | ||| | | ||| || | ||||| ||||| Sbjct 116933 GCATGTGCTGAGGTCTCTCTACTACCTTCCCTTGCACTTTTAAGAGATAGGACCGTTCCA 116992 Query 66634 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 66682 | || || || ||||| || | || |||||| || || ||||| || Sbjct 116993 AGGTCTTGAAGCCAAAGTAATCATAGTCAAAGTCCCGATCATAAATGAT 117041 >seq320 Length=1281786 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 ||| || ||||| ||| | || |||| |||| | ||||| | ||| |||||||| || Sbjct 81808 TCCACCTTGATCAGCGTAGCGCGCAGTGTCATTAAACACTCTAAGCATAGGAATAATGCC 81867 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 |||||| | ||||| |||| || || || || |||||||||||| | || Sbjct 81868 ATTGGAACTCCCATTTATCCCACGAATGTAACTGCCTGCAGCACGAATATTATGCACAGA 81927 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 ||||| ||||| || || | || || | || || || || |||||| | || Sbjct 81928 AAGACCAATTCCTCCAGCTAGCTTGCTAATAACAGCACACTCCTTCAAAGTATCAAATAT 81987 Query 66395 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 66437 |||||| || |||||||| ||||| | ||||| |||||| Sbjct 81988 GCCCTCAATGCTATCATCTTTCATGCACACAAGAAAGCAGCTA 82030 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/153 (73%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 65973 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACAC 66032 ||||| ||| || | ||||||||| || |||| || ||| ||||| || || Sbjct 81233 TACAAATTTTCAAATTTTTCTCCCCAACAATCAGCCAAACCGGGAGCTTCATTGGGGCAA 81292 Query 66033 ATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 66092 | ||| ||||| || ||| | |||| || ||||||||||||||||||||| ||| Sbjct 81293 AACAAAGACCAGCTGCCATCACCTCGGACTCTTTCCATAAAGAGATCAGGAATCCAGAGA 81352 Query 66093 GCTATA-AATAAATCTCTGGTTCTATGTTCCTC 66124 || ||| ||||||||||| | || |||||| || Sbjct 81353 GC-ATAGAATAAATCTCTTGCTCGATGTTCTTC 81384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658111491203680