Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1752 140 3e-28 >seq1752 Length=70440 Score = 140 bits (154), Expect = 3e-28 Identities = 382/571 (67%), Gaps = 27/571 (5%) Strand=Plus/Plus Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 |||||||| || ||||| || | ||||||||||| || | |||||||| |||||| Sbjct 24529 AAACACGCGAAGTCACAGTGCAAGCCCTCATCTCGCGAGATCAACTCGTTTGAGAATGTT 24588 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATG-ACCCGGAAAA 13987 ||||| |||||||| || || || |||| ||||||||| || ||||| | || ||||| Sbjct 24589 AATCCCGGCATCAAGCCACGCTTCTTTAGCCAAAATATCGC-GCAAAAGCTTCCAGAAAA 24647 Query 13988 GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTT 14047 ||||||||||| || ||||| || || | | || |||| | | | | Sbjct 24648 AAATATTCCCTCCACACAGGCAAAAGCGATCAGCCTCTCCGCAAAAG-----TCTCCGAA 24702 Query 14048 CGAT--ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATA 14105 | || ||||| | ||||| |||| |||||| | | || | || ||||| Sbjct 24703 CCATCGATCCACCTGAGGGCCCACTCAGCTTTTTTAGCCACACAAGGGACAGTCTCAATT 24762 Query 14106 GCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTAT-CAATAAGTAAG-C 14163 |||| ||| || | |||||| || | | | ||| || || | ||| || ||| | Sbjct 24763 GCATGAAACAAGCGATTCTTCTCGTTGGAATCTTTAATATAAGTCTCCAACAA--AAGAC 24820 Query 14164 TATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATA-AAAGCATCTAGCT 14222 | ||||| || || || || ||||| ||||| || || || ||||| |||||| | ||| Sbjct 24821 TGTACATCTCGGAATGGATATTTTCAATAGCGATTTGGAATCCATAGAAAGCA-CGAGCC 24879 Query 14223 TC--CGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCAT 14280 || | ||| || |||||| ||| | | | || | ||||| ||| ||||||| Sbjct 24880 TCAGCAACC--TGGACTTCCTTCATAAAACGTCCAGCGAGGTTTTCGAGAACGATACCAT 24937 Query 14281 CACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCAT----TGTTG 14336 | || ||||| ||||| | | | | | |||| |||| ||||| |||| Sbjct 24938 CGGAGGCGGCAAAGAATGCAAGAACATGGGTGACAAAG---TGCTTTTCATCGGGTGTT- 24993 Query 14337 AGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTA 14396 || || ||| | | | ||| | ||| ||||| || || ||| | |||||||| Sbjct 24994 AGGGCTTCCCAGTGGCGGAGATCTTGAGAGAGATCGACCTCCTCAGCAGTCCAAAAGGAG 25053 Query 14397 GCGACAGCTTTTTTATACATTACCCATATTT 14427 || | ||||| ||||||||| |||| |||| Sbjct 25054 GCCTCGGCTTTCTTATACATTTCCCAGATTT 25084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479683313336800