Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1752 136 4e-27 >seq1752 Length=70440 Score = 136 bits (150), Expect = 4e-27 Identities = 379/570 (66%), Gaps = 25/570 (4%) Strand=Plus/Plus Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716 |||||||| || ||||| || | ||||||||||| || | |||||||| |||||| Sbjct 24529 AAACACGCGAAGTCACAGTGCAAGCCCTCATCTCGCGAGATCAACTCGTTTGAGAATGTT 24588 Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATG-ATCCGGAAAA 13775 ||||| |||||||| || || || |||| ||||||||| || || || | ||| ||||| Sbjct 24589 AATCCCGGCATCAAGCCACGCTTCTTTAGCCAAAATATCGC-GCAAAAGCTTCCAGAAAA 24647 Query 13776 GAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTT 13835 ||||||||||| || ||||| || || || | || |||| | | | | Sbjct 24648 AAATATTCCCTCCACACAGGCAAAAGCGATCAGCCTCTCCGCAAAAG-----TCTCCGAA 24702 Query 13836 TGAT--ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATT 13893 || ||||| | ||||| |||| |||||| | | || | || || ||| Sbjct 24703 CCATCGATCCACCTGAGGGCCCACTCAGCTTTTTTAGCCACACAAGGGACAGTCTCAATT 24762 Query 13894 GCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTAT-CAATAAGTAAG-C 13951 |||| || || | | |||||| || | | | ||| || || | ||| || ||| | Sbjct 24763 GCATGAAACAAGCGATTCTTCTCGTTGGAATCTTTAATATAAGTCTCCAACAA--AAGAC 24820 Query 13952 TATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTT 14011 | ||||| || || || || ||||| ||||| || || || ||||| ||| | ||| | Sbjct 24821 TGTACATCTCGGAATGGATATTTTCAATAGCGATTTGGAATCCATAGAAAGCACGAGCCT 24880 Query 14012 CTG--ACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATC 14069 | | ||| || || ||| ||| | | | || | |||||| ||| |||||||| Sbjct 24881 CAGCAACC--TGGACTTCCTTCATAAAACGTCCAGCGAGGTTTTCGAGAACGATACCATC 24938 Query 14070 ACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCAT----TGTTGA 14125 || ||||| ||||| | | | | | |||| |||| ||||| |||| | Sbjct 24939 GGAGGCGGCAAAGAATGCAAGAACATGGGTGACAAAG---TGCTTTTCATCGGGTGTT-A 24994 Query 14126 GTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAG 14185 | || ||| | | | ||| | ||| ||||| || || ||| | |||||||| | Sbjct 24995 GGGCTTCCCAGTGGCGGAGATCTTGAGAGAGATCGACCTCCTCAGCAGTCCAAAAGGAGG 25054 Query 14186 CGACAGCTTTTTTATACATTACCCATATTT 14215 | | ||||| ||||||||| |||| |||| Sbjct 25055 CCTCGGCTTTCTTATACATTTCCCAGATTT 25084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478544219453280