Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq61 89.7 4e-13 seq887 86.0 5e-12 seq558 84.2 2e-11 seq166 82.4 6e-11 >seq61 Length=2804743 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | | | ||||||| | ||| |||||||| | ||| ||||| | | Sbjct 1593111 CCACCACGCAGACGAAGCGCCAAATGTAAAGTTGATTCCTTTTGGATATTATAATCAGCC 1593052 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| | || || | ||||| || ||||| || |||| ||| ||||| | ||| Sbjct 1593051 AACGTACGGCCATCTTCAATCTGTTTACCAGCAAAGATTAATCTCTGCTGATCTGGCGGG 1592992 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || ||||| || || | || || || | | ||||| | ||| || Sbjct 1592991 ATTCCCTCTTTGTCTTGAATTTTTGCCTTCACATTGTCTATGGTGTCCGAACTCTCTACT 1592932 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | ||| || ||||| || || || ||||||||||| |||||||| Sbjct 1592931 TCCAACGTGATGGTTTTCCCAGTGAGTGTTTTCACAAATATTTGCAT 1592885 >seq887 Length=435773 Score = 86.0 bits (94), Expect = 5e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 |||||| || | |||| ||||| || | |||||||||| || |||||| | || || Sbjct 324299 CACCAAGTGAAGAGTGGATTCCTTCTGGATGTTGTAATCGGCCAGTGTACGGCCATCCTC 324358 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 | ||| || || ||||| || | | ||| || || | || | ||||| || || || Sbjct 324359 AAGTTGCTTTCCAGCAAAGATGAGCCTCTGCTGGTCAGGTGGGATCCCTTCCTTATC-CT 324417 Query 43020 GA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTT 43078 || || |||| || || ||| ||||| | || || |||| || ||||| | Sbjct 324418 GAATCTTGGCTTTCACGTTGTCAATAGTGTCTGAACTTTCCACCTCTAGAGTGATAGTCT 324477 Query 43079 TTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTTAA 43117 | || || || |||||||||||||| ||||| | ||||| Sbjct 324478 TCCCAGTAAGGGTTTTCACAAAAATCTGCATCTGCTTAA 324516 >seq558 Length=819058 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 42881 CGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGG 42940 |||| ||||| || | | |||| || | |||| |||||| || | ||||| || | Sbjct 127113 CGCCACCACGGAGACGAAGTACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAG 127054 Query 42941 ACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCG 43000 | ||||| | || |||| ||| || ||||| || |||| ||||| ||||||| | Sbjct 127053 CGAGAGTACGGCCATCCTCCAGTTGCTTCCCGGCGAAGATCAGCCGCTGCTGATCGGGAG 126994 Query 43001 GCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | | || || || || |||| | ||||| || | | ||||| | ||| | Sbjct 126993 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCAA 126934 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | |||| ||||| || || || ||||| ||||||||||| || ||||| Sbjct 126933 CCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCAT 126885 >seq166 Length=1910501 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | ||||||||| | |||||| | | || || | ||| ||||| |||||| Sbjct 30342 TCCTTCTGAATATTGTAATCAGCCAATGTTCTCCCATCCTCAAGTTGCTTGCCAGCAAAA 30283 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 ||||| | ||| || || | || | || || || || |||| | ||||| || Sbjct 30282 ATCAACCTCTGCTGGTCTGGAGGAATGCCCTCCTTCTCTTGGATCTTAGCCTTGACATTG 30223 Query 43039 CCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| || || ||| ||| || || | ||||| |||||||| ||||| || || || Sbjct 30222 TCAATAGTATC-TGAGCTCTCAACCTCCAAGGTTATGGTTTTTCCAGTTAGGGTCTTGAC 30164 Query 43098 AAAAATTTGCAT 43109 |||||| ||||| Sbjct 30163 AAAAATCTGCAT 30152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381334963536216