Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1752 259 6e-64 seq79 107 3e-18 seq755 100 4e-16 >seq1752 Length=70440 Score = 259 bits (286), Expect = 6e-64 Identities = 431/618 (70%), Gaps = 6/618 (1%) Strand=Plus/Plus Query 42061 CAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGT 42120 |||||| ||||| || ||||||| |||||||||| || || ||||| || || || Sbjct 24528 CAAACACGCGAAGTCACAGTGCAAGCCCTCATCTCGCGAGATCAACTCGTTTGAGAATGT 24587 Query 42121 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATG-ATCCAGAAA 42179 | ||| ||||| | ||||||||| || ||||||||||| | |||||| | |||||||| Sbjct 24588 TAATCCCGGCATCAAGCCACGCTTCTTTAGCCAAAATATCG-CGCAAAAGCTTCCAGAAA 24646 Query 42180 AGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG--TC 42237 | || ||||| || || ||||| || || || ||||| || || | | | | | Sbjct 24647 AAAATATTCCCTCCACACAGGCAAAAGCGATCAGCCTCTCCGCAAAA--GTCTCCGAACC 24704 Query 42238 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 42297 || |||||| | | ||||| || || || || |||||||| | || || || || Sbjct 24705 ATCGATCCACCTGAGGGCCCACTCAGCTTTTTTAGCCACACAAGGGACAGTCTCAATTGC 24764 Query 42298 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATA 42357 || ||| | || || || || |||||||| ||| || || | ||||||||| || Sbjct 24765 ATGAAACAAGCGATTCTTCTCGTTGGAATCTTTAATATAAGTCTCCAACAAAAGACTGTA 24824 Query 42358 CATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGT 42417 ||| || ||||| || |||||||| || || || ||||| |||||| | ||||| | Sbjct 24825 CATCTCGGAATGGATATTTTCAATAGCGATTTGGAATCCATAGAAAGCACGAGCCTCAGC 24884 Query 42418 AACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGC 42477 |||||| ||||| | ||| ||| |||| | |||||| || || || || ||| Sbjct 24885 AACCTGGACTTCCTTCATAAAACGTCCAGCGAGGTTTTCGAGAACGATACCATCGGAGGC 24944 Query 42478 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCA 42537 ||||| || || | ||||| | | ||| | ||||| || ||||||| | ||| Sbjct 24945 GGCAAAGAATGCAAGAACATGGGTGACAAAGTGCTTTTCATCGGGTGTTAGGGCTTCCCA 25004 Query 42538 ATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTT 42597 | || ||||| ||| | ||| || || || | |||||||| || || || || || Sbjct 25005 GTGGCGGAGATCTTGAGAGAGATCGACCTCCTCAGCAGTCCAAAAGGAGGCCTCGGCTTT 25064 Query 42598 TTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATT 42657 |||||||| | |||||| | | |||| ||||||||| ||| || | || || || Sbjct 25065 CTTATACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAAACGATCTGAGTT 25124 Query 42658 TGGTGCAAGGATCGGTTC 42675 ||| ||||||| ||| || Sbjct 25125 TGGGGCAAGGAGCGGCTC 25142 >seq79 Length=2571107 Score = 107 bits (118), Expect = 3e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 ||||| ||||| || | ||| ||||||||||| || |||||| | ||||| | || Sbjct 116813 GTTCCAGCATTGAAAAGGGTGGGAGAAGCGTGTGTGAACCATCGCTGAGACATCAAATGA 116872 Query 72478 TACGTCTCAATAGCTGATTCTATATC-CCATTGATGTATTCCTACCGCGACACGCATTAA 72536 || || |||||| | || || ||||| | ||| || ||||| || || || | ||||| Sbjct 116873 TAGGTTTCAATAACCGAATCAATATCATCCTTG-TGAATTCCAACAGCAACCCTCATTAG 116931 Query 72537 CATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAA 72596 ||| ||||||||||| || || | ||| | | ||| || | |||||| |||||| Sbjct 116932 CATGTGCTGAGGTCTCTCCACAACCTTCCCTTGAACTTTTAAGAGGTAGGACCTTTCCAG 116991 Query 72597 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 || ||||| ||||| || | || ||||| || || ||||| || Sbjct 116992 GGTCTTAAAGCCAAAGTAATCATAGTTGAAGTCCCGATCATAAATGAT 117039 Score = 95.1 bits (104), Expect = 2e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 |||||| ||||| | || | || || | ||| | || | ||||| |||| |||||| Sbjct 116399 TCCTCCTTGATCAACATAACGGGCAGTATCATTGAACACCCGTAACATGGGAACAATACC 116458 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 ||| |||| ||||| || || ||||||| ||| | |||||||||||| ||| || Sbjct 116459 ATTAGATGTCCCATTTGTTCCACGAATATAGCCGCCAGTAGCACGAATATTGTGAATAGA 116518 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | || ||||| || || ||| ||| | || || || || |||||||| || Sbjct 116519 GACGCCAATTCCTCCAGCAGATTTGCTGATAACAGCACACTCCTTCAAAGTATCATATAT 116578 Query 72357 GCCCTCTATACTATCATCCATCATG 72381 ||| || ||||||||||| ||||| Sbjct 116579 GCCTTCAATACTATCATCTTTCATG 116603 >seq755 Length=570705 Score = 100 bits (110), Expect = 4e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 |||||| ||||| | || | || || | ||| | || | ||||| |||| ||| || Sbjct 116405 TCCTCCTTGATCAACATACCGTGCAGTATCATTGAACACACGTAACATGGGAACAATGCC 116464 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 ||| |||| ||||| || || ||||| || ||| | |||||||||||| || || Sbjct 116465 ATTAGATGTCCCATTTGTTCCACGAATATAACTACCAGTAGCACGAATATTGTGAACGGA 116524 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | ||| ||||| ||||| |||| ||| | || || || || |||||||| || Sbjct 116525 GACACCAATTCCTCCTGCAGATTTACTGATAACAGCACACTCCTTCAAAGTATCATATAT 116584 Query 72357 GCCCTCTATACTATCATCCATCATG 72381 ||| || ||||||||||| ||||| Sbjct 116585 GCCTTCAATACTATCATCTTTCATG 116609 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 ||||| |||||||| | ||| || || || || || |||||| || ||||| | || | Sbjct 116815 GTTCCAGCATTAAAAAGGGTGGGCGATGCATGAGTGAACCATCGTTGAGACATCAAATGG 116874 Query 72478 TACGTCTCAATAGCTGATTCTATATCCCATTGATGT--ATTCCTACCGCGACACGCATTA 72535 || || | ||| | || || ||||| || |||| ||||| || || || | ||| | Sbjct 116875 TAGGTTTTGATAACAGAATCAATATC--ATCCATGTGAATTCCAACAGCAACTCTCATCA 116932 Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCA 72595 ||| ||||||||||| || || | ||| | | ||| || | ||||| ||||| Sbjct 116933 GCATGTGCTGAGGTCTCTCTACTACCTTCCCTTGCACTTTTAAGAGATAGGACCGTTCCA 116992 Query 72596 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 | || || || ||||| || | || |||||| || || ||||| || Sbjct 116993 AGGTCTTGAAGCCAAAGTAATCATAGTCAAAGTCCCGATCATAAATGAT 117041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671076683383520