Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1752 149 9e-31 >seq1752 Length=70440 Score = 149 bits (164), Expect = 9e-31 Identities = 382/564 (68%), Gaps = 26/564 (5%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||||||||||| || || || |||||||||||||||| | || ||||||||||| Sbjct 25082 ATCTGGGAAATGTATAAGAAAGCCGAGGCCTCCTTTTGGACTGCTGAGGAGGTCGATCTC 25023 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGAC----TGAAACTGAGCGAGAGTTTAT 125134 || | || || | | ||||| | | | || ||||| ||| | ||| | Sbjct 25022 TCTCAAGATCTCCGCCACTGGGAAGCCC-TAACACCCGATGAAA---AGC---ACTTTGT 24970 Query 125135 ATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGA 125193 | || || | || |||||||||| ||||||||| ||||| ||| || || | || Sbjct 24969 CACCCATGTTCTTGCATTCTTTGCCGCCTCCGATGGTATCGTTCTCGAAAACCTCGCTGG 24910 Query 125194 CACGATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCGTGCTTT-TACGGATTCCAAA 125250 ||| || | | ||| | | ||| || | |||| ||||||||| || |||||||||| Sbjct 24909 -ACGTTT-TATGAAG-GAAGTCCAGGTTGCTGAGGC-TCGTGCTTTCTATGGATTCCAAA 24854 Query 125251 TCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCG 125310 || ||||| || | || || || |||||| | || | || | || ||| | Sbjct 24853 TCGCTATTGAAAATATCCATTCCGAGATGTACAGTCTTTTGTTGGAGACTTATATTAAAG 24794 Query 125311 ATCCGCAACGTAAACACATGCTC-TTTAACGCAATCGACACGGTGCCGTCTATACGTAAA 125369 || | ||||| || | ||| ||| | ||||| || || || || | | | |||| Sbjct 24793 ATTC-CAACGAGAAGAATCGCTTGTTTCATGCAATTGAGACTGTCCCTTGTGTGGCTAAA 24735 Query 125370 AAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTG 125429 || ||| | |||| | |||||||||||| || ||| || || || ||| Sbjct 24734 AAAGCTGAGTGGGCCCTCAGGTGGATCGATGGTTCGGAGACTTTT---GCGGAGAGGCTG 24678 Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAG-TTTTGCGGCCATCTTTTG 125488 | || || ||| || ||||| || || ||||| || || ||||||| | || ||||| Sbjct 24677 ATCGCTTTTGCCTGTGTGGAGGGAATATTTTTTTCTGGAAGCTTTTGCG-CGATATTTTG 24619 Query 125489 GCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGA 125548 ||| |||||||| || | ||||| ||| | || | |||||||| || || ||||| Sbjct 24618 GCTAAAGAAGCGTGGCTTGATGCCGGGATTAACATTCTCAAACGAGTTGATCTCGCGAGA 24559 Query 125549 CGAGGGCCTACACTGTGACTTTGC 125572 |||||| | ||||||||||| || Sbjct 24558 TGAGGGCTTGCACTGTGACTTCGC 24535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740990170335520