Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq68 107 1e-18 seq1759 91.5 1e-13 seq616 91.5 1e-13 seq154 91.5 1e-13 seq6 91.5 1e-13 seq629 82.4 6e-11 >seq68 Length=2695109 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | || | || || ||||||||||| || ||||| ||||| || || Sbjct 1666205 CCACCTCTGAGTCGGAGTACCAAGTGAAGGGTGGACTCCTTTTGAATGTTATAGTCAGCA 1666264 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | || || | ||||||||||| | ||||| | || ||||| ||| Sbjct 1666265 AGAGTGCGTCCATCCTCAAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGTGGG 1666324 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || ||| ||| | || ||| | || ||||| ||| |||| || Sbjct 1666325 ATTCCTTCCTTATCCTGAATCTTGGTTTTCACATTGTCAATGGTGTCGGAGCTTTCCACC 1666384 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| ||||| || || || || ||||| ||||| |||||||| Sbjct 1666385 TCAAGGGTGATGGTCTTTCCAGTGAGGGTTTTCACAAAGATTTGCAT 1666431 >seq1759 Length=69365 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || ||||| || || |||||| ||| | || |||| |||| || Sbjct 30263 TGAAGGGTGGACTCCTTTTGGATATTATAATCGGCAAGAGTCCTTCCGTCCTCTAGCTGC 30322 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || ||| | ||||| || || || || ||| ||||||||||| || || ||| Sbjct 30323 TTCCCGGCGAAGATCAACCGCTGCTGATCAGGTGGGATTCCTTCTTTATCTTGGATCTTG 30382 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| || | || || || || |||| || || | ||| ||||| || || || Sbjct 30383 GCCTTGACGTTGTCAATTGTGTCAGAGCTTTCAACCTCCAGGGTTATGGTCTTGCCGGTG 30442 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || ||||| ||||| || ||||| Sbjct 30443 AGGGTTTTGACAAAGATCTGCAT 30465 >seq616 Length=741428 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || || || ||||| ||||| || | || | || |||| || Sbjct 398074 TGAAGGGTGGACTCCTTCTGAATGTTATAATCAGCGAGGGTCCTTCCATCCTCTAGCTGC 398133 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | ||||| || || ||||| ||| || ||||| || || ||| ||| Sbjct 398134 TTCCCAGCAAAGATCAATCGCTGCTGGTCTGGTGGGATACCTTCCTTATCTTGAATCTTG 398193 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 || || | ||||| ||||| |||| || || ||||| || || ||||| || Sbjct 398194 GCTTTGACGTTGTCTATTGTATCCGAGCTTTCGACCTCCAAGGTTATCGTCTTACCGGTG 398253 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || ||||||||||| || ||||| Sbjct 398254 AGGGTTTTTACAAAGATCTGCAT 398276 >seq154 Length=1955999 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||| ||| || || || ||||| ||||| || | || || |||| || Sbjct 1195620 TGAAGGGAGGACTCATTCTGAATGTTATAATCAGCGAGGGTCCTTCGATCCTCTAGCTGC 1195679 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | ||||| || || ||||| ||| || ||||| || || ||| ||| Sbjct 1195680 TTCCCAGCAAAGATCAATCGCTGCTGGTCTGGTGGGATACCTTCCTTATCTTGAATCTTG 1195739 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 | || || | ||||| ||||| |||| || || ||||| ||||| ||||| || Sbjct 1195740 GTTTTGACGTTGTCTATTGTATCCAAGCTTTCAACCTCCAAGGTTATGGTCTTACCGGTG 1195799 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || ||||||||||| || ||||| Sbjct 1195800 AGGGTTTTTACAAAGATCTGCAT 1195822 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || || || ||||| ||||| || | || | || |||| || Sbjct 1202518 TGAAGGGTGGACTCCTTCTGGATGTTATAATCAGCGAGGGTCCTTCCATCCTCTAGCTGC 1202577 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | ||||| || || ||||| ||| || ||||| || || ||| ||| Sbjct 1202578 TTCCCAGCAAAGATCAATCGCTGCTGGTCTGGTGGGATACCTTCCTTATCTTGAATCTTG 1202637 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 || || | ||||| ||||| |||| || || ||||| || || ||||| || Sbjct 1202638 GCTTTGACGTTGTCTATTGTATCCGAGCTTTCGACCTCCAAGGTTATCGTCTTACCGGTG 1202697 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || ||||||||||| || ||||| Sbjct 1202698 AGGGTTTTTACAAAGATCTGCAT 1202720 >seq6 Length=4471405 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 15166 GGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCC 15225 ||| || ||||| || || |||||||| || | ||| | || || | || || || Sbjct 4400293 GGTAGACTCTTTCTGGATATTGTAATCAGCAAGGGTCCTCCCATCCTCGAGCTGCTTTCC 4400352 Query 15226 AGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTT 15285 ||| | ||||| | || || || ||| || ||||| ||||| |||||| ||| Sbjct 4400353 AGCAAAAATCAACCTCTGCTGATCTGGTGGGATACCTTCCTTGTCTTGAATTTTAGCCTT 4400412 Query 15286 TACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGT 15345 ||| | || ||||| || | | ||||| || ||||||||||| || || || || || Sbjct 4400413 CACATTGTCAATGGTGTCCGAACTCTCTACCTCCAAGGTAATGGTCTTCCCAGTAAGGGT 4400472 Query 15346 TTTTACAAAAATTTGCAT 15363 ||| ||||| |||||||| Sbjct 4400473 TTTCACAAAGATTTGCAT 4400490 >seq629 Length=730630 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || || ||||| || || || || |||||||| | | | | | ||||| | || Sbjct 102405 TGGAGAGTGGATTCCTTCTGAATATTGTAATCAGCCAAAGTCCGGCCATCTTCCAGCTGC 102346 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || ||| | |||| | || ||||| ||| ||||| || ||||| |||||| Sbjct 102345 TTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGAATTTTT 102286 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| || | || ||||| ||||| | || || || |||||||| ||||| || ||| Sbjct 102285 GCCTTGACGTTATCAATGGTGTCGCTGCTCTCCACCTCCAAGGTAATAGTTTTCCCAGTC 102226 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 | || || || ||||||||||| Sbjct 102225 AACGTCTTAACGAAAATTTGCAT 102203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362146306432332