Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq166 89.7 4e-13 seq765 86.0 5e-12 seq403 86.0 5e-12 seq1022 84.2 2e-11 seq629 84.2 2e-11 seq61 84.2 2e-11 seq616 82.4 6e-11 seq68 82.4 6e-11 >seq166 Length=1910501 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | ||||| ||||| |||||||||||||| |||| |||| | | ||||| Sbjct 30360 ACCAAGTGAAGGGTAGATTCCTTCTGAATATTGTAATCAGCCAATGTTCTCCCATCCTCA 30301 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 || || || || ||| |||| | |||||||| || || | |||||| || || Sbjct 30300 AGTTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGAGGAATGCCCTCCTTCTCTTGG 30241 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || || || || | | | | |||||| ||| || | ||| |||||||| Sbjct 30240 ATCTTAGCCTTGACATTGTCAATAGTATCTGAGCTCTCAACCTCCAAGGTTATGGTTTTT 30181 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || |||| || ||||||||||| ||||| Sbjct 30180 CCAGTTAGGGTCTTGACAAAAATCTGCAT 30152 >seq765 Length=559349 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| || | ||| | ||| | ||| | || || ||||| ||||| |||||||| ||| Sbjct 186967 CCTCCACGAAGCCTGAGCACAAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAATCAGCC 186908 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | || ||||||||||| || || | || || |||||||| || || Sbjct 186907 AAAGTCCGGCCATCTTCCAGCTGTTTCCCAGCGAAGATCAGCCTCTGCTGGTCTGGTGGG 186848 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||| ||||| ||||| || || | | | ||| |||| |||| Sbjct 186847 ATACCCTCCTTGTCCTGTATTTTTGCCTTGACATTATCAATAGTGTCGCTGCTCTCCACC 186788 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||| |||||| ||||| || || || || || || ||||| ||||| Sbjct 186787 TCGAGGGTAATAGTTTTTCCAGTCAAGGTCTTAACGAAAATCTGCAT 186741 >seq403 Length=1096870 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| || || || || |||||||| ||||| ||||| |||| || | | || || Sbjct 1091418 CACCAAATGTAAAGTTGATTCCTTTTGGATATTATAATCAGCCAACGTACGGCCATCTTC 1091477 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATC-CACGGGCACGCCCTCTTTGTCGG 18950 ||||||||||| ||| | || | |||||||||||| || | | ||||||||||| Sbjct 1091478 AAGCTGTTTACCAGCAAAGATTAATCTCTGCTGATCTGACAAG-ATCCCCTCTTTGTCTT 1091536 Query 18951 CAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTT 19010 |||||| || || | | | | ||||| | ||| ||| | || |||| || Sbjct 1091537 GAATTTTTGCCTTCACATTGTCTATGGTATCCGAACTCTCTACTTCCAACGTGATGGCTT 1091596 Query 19011 TACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 | || || | ||||| ||||| |||||||| Sbjct 1091597 TCCCAGTGAGTGTTTTCACAAATATTTGCAT 1091627 >seq1022 Length=319891 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| || | | |||||| |||| ||| | || |||||||| || || |||||||| | Sbjct 175731 TTCCACCCCTAAGCCTTAAAACCAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAATCAG 175672 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 ||| ||| | | || |||| |||||||| ||| |||| | |||||||||||| | Sbjct 175671 CCAGGGTTCTACCATCTTCCAATTGTTTACCAGCAAAAATCAATCTCTGCTGATCAGGAG 175612 Query 18933 GCACGCCCTCTTTGTC 18948 | | ||| || ||||| Sbjct 175611 GAATGCCTTCCTTGTC 175596 >seq629 Length=730630 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| || || | ||| | ||| | ||| | || || ||||| |||||||||||||| | Sbjct 102431 TTCCCCCGCGAAGCCTGAGCACAAGGTGGAGAGTGGATTCCTTCTGAATATTGTAATCAG 102372 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 ||| || | | || |||||||| || || || | || || |||||||| || | Sbjct 102371 CCAAAGTCCGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGTG 102312 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||||| ||||| |||||| || || | | | || |||| |||| Sbjct 102311 GGATTCCCTCCTTGTCCTGAATTTTTGCCTTGACGTTATCAATGGTGTCGCTGCTCTCCA 102252 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | |||||| ||||| || || || || || || ||||||||||| Sbjct 102251 CCTCCAAGGTAATAGTTTTCCCAGTCAACGTCTTAACGAAAATTTGCAT 102203 >seq61 Length=2804743 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| || |||| | | | ||| || || || || |||||||| ||||| ||||| | Sbjct 1593113 TTCCACCACGCAGACGAAGCGCCAAATGTAAAGTTGATTCCTTTTGGATATTATAATCAG 1593054 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 ||| || | | || || | ||||||||| ||| | || | |||||||||||| | Sbjct 1593053 CCAACGTACGGCCATCTTCAATCTGTTTACCAGCAAAGATTAATCTCTGCTGATCTGGCG 1592994 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||||||||||| |||||| || || | | | | || || | ||| Sbjct 1592993 GGATTCCCTCTTTGTCTTGAATTTTTGCCTTCACATTGTCTATGGTGTCCGAACTCTCTA 1592934 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | || |||||||| || || | ||||| ||||| |||||||| Sbjct 1592933 CTTCCAACGTGATGGTTTTCCCAGTGAGTGTTTTCACAAATATTTGCAT 1592885 >seq616 Length=741428 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||| | ||||| || |||||||| ||||| || |||||||| | || | | ||||| Sbjct 397839 CACAAGGTGCAGAGTGGACTCCTTCTGAATGTTATAATCCGCGAGGGTCCTCCCATCCTC 397898 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || ||| | |||||||||||||||||| || | ||||| ||||| Sbjct 397899 TAGCTGCTTCCCAGCAAAGATAAGTCTCTGCTGATCCGGTGGAATTCCCTCCTTGTCCTG 397958 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||||| || || | | | | |||||| | || || | || || || || Sbjct 397959 GATTTTTGCCTTCACATTGTCAATTGTATCGGAACTTTCGACCTCCAGAGTGATCGTCTT 398018 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || || || |||||||| ||||| Sbjct 398019 CCCAGTCAAGGTCTTCACAAAAATCTGCAT 398048 >seq68 Length=2695109 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 ||||| || |||||||| ||||| |||||||| || | || | ||||| ||||| Sbjct 1665088 GTGCAGAGTGGACTCCTTCTGAATGTTGTAATCTGCAAGGGTACGTCCATCCTCAAGCTG 1665147 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 || || ||| | ||||| |||||||| || || | |||||| ||||| ||||| Sbjct 1665148 CTTCCCAGCAAAGATAAGCCTCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGGATTTT 1665207 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 || || | | | || || | |||| || | ||| ||||| || || || Sbjct 1665208 GGCCTTGACATTATCAATGGTGTCAGAACTCTCCACCTCCAAGGTGATGGTCTTTCCAGT 1665267 Query 19018 TAAAGTTTTGACAAAAATTTGCATT 19042 ||||| || ||||||||||||||| Sbjct 1665268 CAAAGTCTTCACAAAAATTTGCATT 1665292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414535147980088