Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq1759 93.3 3e-14 seq154 86.0 4e-12 >seq1759 Length=69365 Score = 93.3 bits (102), Expect = 3e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 43961 CGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCT 44020 ||| |||| || ||||| || |||||||| || | || ||||| || | || | ||| Sbjct 35705 CGCCCATCCTCTAATTGCTTCCCTGCAAAGATAAGCCTCTGCTGATCTGGTGGAATACCC 35764 Query 44021 TCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACC 44080 |||||||| ||||||| ||||| || ||| ||||| | ||| || || | Sbjct 35765 TCTTTATCCTGAATTTTTGCCTTGACATTATCAATTGTATCAGAGCTCTCAACCTCCAGA 35824 Query 44081 GTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||||||| || || || |||||||||||||| || ||||| Sbjct 35825 GTAATTGTCTTCCCAGTCAAAGTCTTCACAAAAATCTGCAT 35865 >seq154 Length=1955999 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 |||||| ||||| | | |||| ||| || || || || ||||| ||||| ||| Sbjct 1202949 ACCTCCCCTCAAACGGAGAACCAGATGCAGAGTAGATTCCTTCTGAATGTTATAGTCGGC 1203008 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 ||| | |||| || | || ||||| ||||| ||||||| |||||||| |||| Sbjct 1203009 TAAGGTCCTGCCATCCTCTAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGG 1203068 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||| |||||| || || ||||| || ||| || || | ||| || Sbjct 1203069 GATCCCTTCCTTATCTTGGATCTTGGCCTTGACGTTATCAATTGTGTCAGAGCTCTCAAC 1203128 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATGTCG 44125 || | || || || || ||||| | |||||||||||| || |||||| || Sbjct 1203129 CTCAAGAGTTATGGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCATGCCG 1203180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354745378654896