Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq509 86.0 5e-12 seq1022 82.4 6e-11 seq887 82.4 6e-11 >seq509 Length=920718 Score = 86.0 bits (94), Expect = 5e-12 Identities = 108/147 (73%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 19970 TTTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTAT 20028 ||| ||||| ||||||||| | |||||| |||| || || || || || || || || Sbjct 59945 TTTAATCATAGTTCCTCCTCTAAGCCTCAAAACCAGGTGAAGAGTTGACTCCTTCTGGAT 59886 Query 20029 GTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTG 20088 ||||||||| | ||| || ||||||||||||||| || ||| |||| | ||||| Sbjct 59885 GTTGTAATCAGAAAGGGTTCTACCATCTTCCAATTGTTTCCCAGCAAAAATTAATCTCTG 59826 Query 20089 TTGATCGACGGGCACGCCTTCTTTGTC 20115 ||||| || | |||||| ||||| Sbjct 59825 CTGATCAGGAGGAATGCCTTCCTTGTC 59799 Score = 86.0 bits (94), Expect = 5e-12 Identities = 108/147 (73%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 19970 TTTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTAT 20028 ||| ||||| ||||||||| | |||||| |||| || || || || || || || || Sbjct 62386 TTTAATCATAGTTCCTCCTCTAAGCCTCAAAACCAGGTGAAGAGTTGACTCCTTCTGGAT 62327 Query 20029 GTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTG 20088 ||||||||| | ||| || ||||||||||||||| || ||| |||| | ||||| Sbjct 62326 GTTGTAATCAGAAAGGGTTCTACCATCTTCCAATTGTTTCCCAGCAAAAATTAATCTCTG 62267 Query 20089 TTGATCGACGGGCACGCCTTCTTTGTC 20115 ||||| || | |||||| ||||| Sbjct 62266 CTGATCAGGAGGAATGCCTTCCTTGTC 62240 >seq1022 Length=319891 Score = 82.4 bits (90), Expect = 6e-11 Identities = 107/147 (73%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 19970 TTTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTAT 20028 ||| ||||| |||| || | | ||| || |||| || || || || || || || || Sbjct 175742 TTTGATCATAGTTCCACCCCTAAGCCTTAAAACCAGGTGAAGAGTTGACTCCTTCTGGAT 175683 Query 20029 GTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTG 20088 ||||||||| ||| ||| || ||||||||||||||| || ||| |||| | ||||| Sbjct 175682 GTTGTAATCAGCCAGGGTTCTACCATCTTCCAATTGTTTACCAGCAAAAATCAATCTCTG 175623 Query 20089 TTGATCGACGGGCACGCCTTCTTTGTC 20115 ||||| || | |||||| ||||| Sbjct 175622 CTGATCAGGAGGAATGCCTTCCTTGTC 175596 >seq887 Length=435773 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 20012 GTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCC 20071 || ||||| || || | ||||||||| ||| || ||| ||||| || || || Sbjct 323430 GTTGATTCCTTCTGGAGGTTGTAATCAGCCAAGGTGCGTCCATCCTCCAACTGCTTCCCA 323489 Query 20072 GCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTC 20131 ||| | || | |||||||||||| || | || || ||||| ||||| ||| Sbjct 323490 GCAAAGATCAACCTCTGTTGATCCGGTGGAATACCCTCCTTGTCTTGGATTTTAGCCTTC 323549 Query 20132 ACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTCAACGTT 20191 || | ||| | ||| | ||| |||| ||||||||||||||| |||||||| Sbjct 323550 ACATTATCAATTGTATCAGAACTTTCAACCTCCAGGGTAATGGTTTTGCCAGTCAACGTC 323609 Query 20192 TTGACAAAAATTTGCATT 20209 ||||||||||| |||||| Sbjct 323610 TTGACAAAAATCTGCATT 323627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419549092566012