Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1752 167 2e-36 >seq1752 Length=70440 Score = 167 bits (184), Expect = 2e-36 Identities = 369/550 (67%), Gaps = 5/550 (1%) Strand=Plus/Plus Query 13147 CATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGT 13206 || ||| || || ||||||||||| || ||||||| || | ||||||||| ||||| Sbjct 24528 CAAACACGCGAAGTCACAGTGCAAGCCCTCATCTCGCGAGATCAACTCGTTTGAGAATGT 24587 Query 13207 TAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACG-AACCCGaaa 13265 || |||||||| | || || || || | ||||||||| || ||||| | || |||| Sbjct 24588 TAATCCCGGCATCAAGCCACGCTTCTTTAGCCAAAATATCGC-GCAAAAGCTTCCAGAAA 24646 Query 13266 aaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTAC 13325 |||||||||| || || ||||| || |||| ||| || || | | | | || Sbjct 24647 AAAATATTCCCTCCACACAGGCAAAAGCGATCAGCCTCTCCGCAAA---AGTCTCCGAAC 24703 Query 13326 TCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTG 13385 || |||||| | |||||| | ||||||| || || | | | || |||| Sbjct 24704 CATCGATCCACCTGAGGGCCCACTCAGCTTTTTTAGCCACACAAGGGACAGTCTCAATTG 24763 Query 13386 CGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTAT 13445 | | ||| || ||| || || || ||| ||||||||| || | ||| | || | Sbjct 24764 CATGAAACAAGCGATTCTTCTCGTTGGAATCTTTAATATAAGTCTCCAACAAAAGACTGT 24823 Query 13446 ACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTG 13505 |||| || ||||| |||||||| || || |||||||| ||||| ||| | |||||| | Sbjct 24824 ACATCTCGGAATGGATATTTTCAATAGCGATTTGGAATCCATAGAAAGCACGAGCCTCAG 24883 Query 13506 ATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAG 13565 ||||| ||||| ||| | | | || | ||||||| ||| || || || | Sbjct 24884 CAACCTGGACTTCCTTCATAAAACGTCCAGCGAGGTTTTCGAGAACGATACCATCGGAGG 24943 Query 13566 CAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACC 13625 | ||||| || ||||| | || | | ||| | ||||| | || | | || Sbjct 24944 CGGCAAAGAATGCAAGAACATGGGTGACAAAGTGCTTTTCATCGGGTGTTAGGGCTTCCC 25003 Query 13626 AATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCT 13685 | | | | ||||| || | ||| ||||||||| | |||||||| || || | || | Sbjct 25004 AGTGGCGGAGATCTTGAGAGAGATCGACCTCCTCAGCAGTCCAAAAGGAGGCCTCGGCTT 25063 Query 13686 TCTTATACAT 13695 |||||||||| Sbjct 25064 TCTTATACAT 25073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430943257639704