Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq154 98.7 8e-16 seq574 96.9 3e-15 seq558 87.8 2e-12 seq765 84.2 2e-11 seq616 84.2 2e-11 >seq154 Length=1955999 Score = 98.7 bits (108), Expect = 8e-16 Identities = 148/208 (71%), Gaps = 8/208 (4%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 |||||| ||| |||||| || ||||| || |||||||| || |||| || ||||| Sbjct 1203201 ATGAAGAGTGGACTCCTTCTGGATGTTATAGTCAGCCAACGTGCGGCCGTCTTCAAGCTG 1203260 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || || | ||||||||| || | | ||||||||| || || Sbjct 1203261 CTTGCCGGCGAAGATCAATCTCTGCTGATCGGGTGGAATTCCTTCCTTGTCTTGGATCTT 1203320 Query 48643 CTGCTTGATAGACGCTAT----GGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTAC 48698 |||| |||| ||| |||||||| ||| ||||| |||||||| |||| Sbjct 1203321 G-GCTTT---GACGTTATCGATGGTATCGGAGCTCTCGACCTCGAGAGTTATGGTCTTAC 1203376 Query 48699 CGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||||| ||||| || || |||||||| Sbjct 1203377 CGGTGAGGGTTTTGACGAAGATCTGCAT 1203404 >seq574 Length=792550 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTG 48582 ||||| ||| ||||||||| |||||||| ||||| | | || || ||||||| ||||| Sbjct 430497 TGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGCGAGAGTGCGGC-CGTCCTCAAGCTG 430439 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | || | ||||||||||| || | | ||||||||| || || Sbjct 430438 CTTCCCAGCGAAGATCAGCCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATCTT 430379 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | |||||||| | ||||| ||| | |||||| || || || || Sbjct 430378 GGCCTTGACATTGTCGATGGTATCTGATGACTCAACCTCTAGTGTTATCGTCTTCCCCGT 430319 Query 48703 GAGAGTTTTCACAAAAATCTGCATCGT 48729 | |||||||| || |||||||| || Sbjct 430318 TAAGGTTTTCACGAAGATCTGCATGGT 430292 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTG 48582 ||||| ||| ||||||||| |||||||| ||||| | | || || ||||||| ||||| Sbjct 450376 TGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGCGAGAGTGCGGC-CGTCCTCAAGCTG 450318 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | || | ||||||||||| || | | ||||||||| || || Sbjct 450317 CTTCCCAGCGAAGATCAGCCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATCTT 450258 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | |||||||| | ||||| ||| | |||||| || || || || Sbjct 450257 GGCCTTGACATTGTCGATGGTATCTGATGACTCAACCTCTAGTGTTATCGTCTTCCCCGT 450198 Query 48703 GAGAGTTTTCACAAAAATCTGCATCGT 48729 | |||||||| || |||||||| || Sbjct 450197 TAAGGTTTTCACGAAGATCTGCATGGT 450171 >seq558 Length=819058 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| |||||| || |||||||| ||||| | || | |||||||| ||| Sbjct 127087 TGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGAGTACGGCCATCCTCCAGTTGC 127028 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | ||||||||||| || | | ||||||||| || || Sbjct 127027 TTCCCGGCGAAGATCAGCCGCTGCTGATCGGGAGGGATTCCCTCCTTGTCCTGGATCTTG 126968 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | ||||| || | ||||| ||| | ||||| || || || || Sbjct 126967 GCCTTGACATTGTCGATGGTGTCCGAGGACTCAACCTCTAGGGTTATCGTCTTCCCCGTT 126908 Query 48704 AGAGTTTTCACAAAAATCTGCATCGT 48729 || ||||||||||| |||||||| || Sbjct 126907 AGGGTTTTCACAAAGATCTGCATGGT 126882 >seq765 Length=559349 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/197 (70%), Gaps = 8/197 (4%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||||||||| ||||||||||| |||| || | ||||| |||||||| ||| || | Sbjct 186476 CTCCTTTTGGATGTTGTAATCGGCCAGGGTACGGCCATCCTCAAGCTGCTTTCCGGCGAA 186417 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | ||||||||| || || | | ||| |||||| ||||| ||| | || Sbjct 186416 GATGAGACGCTGCTGGTCAGGAGGGATTCCTTCTTTGTCCTGGATTTT-GGCT---TTGA 186361 Query 48655 CG----CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTT 48710 || | ||||| ||| | ||| ||||| ||||| || || |||||||| || | Sbjct 186360 CGTTATCGATGGTGTCGCTGCTCTCGACCTCGAGAGTTATCGTCTTTCCGGTGAGGGTCT 186301 Query 48711 TCACAAAAATCTGCATC 48727 | || || ||||||||| Sbjct 186300 TAACGAAGATCTGCATC 186284 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| || | ||| | ||| | || || ||| ||||| |||||||||||||||||| Sbjct 186967 CCTCCACGAAGCCTGAGCACAAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAATCAGCC 186908 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || || | || |||||||| || || || | || | | |||||| || || Sbjct 186907 AAAGTCCGGCCATCTTCCAGCTGTTTCCCAGCGAAGATCAGCCTCTGCTGGTCTGGTGGG 186848 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | || ||||||||| ||||| ||||| | | || || ||| | |||| | Sbjct 186847 ATACCCTCCTTGTCCTGTATTTTTGCCTTGACATTATCAATAGTGTCGCTGCTCTCCACC 186788 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 |||| || || ||||| || || | || || || |||||||||||| Sbjct 186787 TCGAGGGTAATAGTTTTTCCAGTCAAGGTCTTAACGAAAATCTGCATC 186740 >seq616 Length=741428 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/210 (71%), Gaps = 12/210 (6%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCG-TCCTCCAGCTG 48582 ||||| ||| |||||| |||||||| |||||||| | ||| || ||||| ||||| Sbjct 398074 TGAAGGGTGGACTCCTTCTGAATGTTATAATCAGCGAGG-GTCCTTCCATCCTCTAGCTG 398132 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || | | || || |||||||| || || | || |||||| || ||| || Sbjct 398133 CTTCCCAGCAAAGATCAATCGCTGCTGGTCTGGTGGGATACCTTCCTTATCTTGAATCTT 398192 Query 48643 CTGCTTGATAGACG----CTATGGTATCGGTAGACTCCGTC-TCGACTGTTATGGTTTTA 48697 |||| |||| |||| ||||| | || | || | || | ||||| || ||| Sbjct 398193 G-GCTTT---GACGTTGTCTATTGTATCCG-AGCTTTCGACCTCCAAGGTTATCGTCTTA 398247 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 |||||||| ||||| ||||| ||||||||| Sbjct 398248 CCGGTGAGGGTTTTTACAAAGATCTGCATC 398277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421212941439452