Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq276 125 4e-24 seq587 120 2e-22 seq1296 116 2e-21 seq335 114 7e-21 seq1843 111 8e-20 seq521 111 8e-20 seq309 111 8e-20 seq114 111 8e-20 seq48 111 8e-20 seq368 109 3e-19 seq1290 107 1e-18 seq939 107 1e-18 seq720 107 1e-18 seq308 107 1e-18 seq50 107 1e-18 seq2081 105 3e-18 seq1530 105 3e-18 seq233 93.3 2e-14 seq840 82.4 4e-11 >seq276 Length=1394198 Score = 125 bits (138), Expect = 4e-24 Identities = 83/93 (89%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||| |||||||| ||||||||||||| | | |||||||| ||||||||||||||||| Sbjct 168293 AATTTATAAAAAAAAAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTA 168352 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| ||||||||||||||| |||| Sbjct 168353 GCACGACGCTCTAACCAACTGAGCTAATAGGCC 168385 >seq587 Length=773479 Score = 120 bits (132), Expect = 2e-22 Identities = 90/104 (87%), Gaps = 3/104 (3%) Strand=Plus/Minus Query 11428 GAAATATAGAATTAATAAAAAATCA--AATTGGCCCATGAAAGGATCGAACCTTCGACCT 11485 |||| || ||| || ||||| ||| |||||||||||| | | ||||||||| |||||| Sbjct 583041 GAAAAATGGAAAAAA-AAAAATTCATAAATTGGCCCATGCAGGTATCGAACCTGCGACCT 582983 Query 11486 TCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 582982 TCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 582939 Score = 104 bits (114), Expect = 1e-17 Identities = 65/71 (92%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 11459 CCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGA 11518 |||||| | | ||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 586136 CCCATGCAGGTATCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGA 586077 Query 11519 GCTAATGGGCC 11529 |||||| |||| Sbjct 586076 GCTAATAGGCC 586066 >seq1296 Length=173115 Score = 116 bits (128), Expect = 2e-21 Identities = 77/86 (90%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| ||| ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 78184 AAAAAATTAAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 78125 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 78124 GCTCTAACCAACTGAGCTAATAGGCC 78099 >seq335 Length=1246921 Score = 114 bits (126), Expect = 7e-21 Identities = 80/92 (87%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||||| ||||||||||||| | | ||||| || ||||||||||||||||||||| Sbjct 1172588 AAAAAAAAAAAAAATTGGCCCATGCAGGTTTCGAATCTGCGACCTTCGCGTTATTAGCAC 1172529 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGTC 11532 |||||||| ||||||||||||||| |||| || Sbjct 1172528 GACGCTCTAACCAACTGAGCTAATAGGCCATC 1172497 >seq1843 Length=62110 Score = 111 bits (122), Expect = 8e-20 Identities = 84/97 (87%), Gaps = 2/97 (2%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 |||||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 48037 AATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 48096 Query 11513 AACTGAGCTAATGGGCCGTCGACGATTGTGATTTTTC 11549 |||||||||||| |||| | || ||| | ||||||| Sbjct 48097 AACTGAGCTAATAGGCCCT-TAC-ATTATAATTTTTC 48131 Score = 109 bits (120), Expect = 3e-19 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 |||||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 46988 AATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 47047 Query 11513 AACTGAGCTAATGGGCC 11529 |||||||||||| |||| Sbjct 47048 AACTGAGCTAATAGGCC 47064 >seq521 Length=892794 Score = 111 bits (122), Expect = 8e-20 Identities = 84/101 (83%), Gaps = 8/101 (8%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAA--------TTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 |||||| ||||||| ||| |||||||||| | | |||||||| ||||||||| Sbjct 399883 AATTAAAAAAAAATAAAACTAAAATATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCG 399824 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| ||||||||||||||| |||| Sbjct 399823 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 399783 Score = 111 bits (122), Expect = 8e-20 Identities = 84/101 (83%), Gaps = 8/101 (8%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAA--------TTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 |||||| ||||||| ||| |||||||||| | | |||||||| ||||||||| Sbjct 437222 AATTAAAAAAAAATAAAACTAAAATATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCG 437163 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| ||||||||||||||| |||| Sbjct 437162 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 437122 >seq309 Length=1305537 Score = 111 bits (122), Expect = 8e-20 Identities = 79/91 (87%), Gaps = 3/91 (3%) Strand=Plus/Minus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 |||||||| || ||||||||| | | |||||||| |||||||||||||||||||||| Sbjct 1081482 ATAAAAAA---AAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACG 1081426 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCCGTC 11532 ||||||| ||||||||||||||| |||| || Sbjct 1081425 ACGCTCTAACCAACTGAGCTAATAGGCCATC 1081395 >seq114 Length=2223408 Score = 111 bits (122), Expect = 8e-20 Identities = 76/85 (89%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| |||| |||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 841777 AAAAATAAAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 841835 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||||| |||| Sbjct 841836 CTCTAACCAACTGAGCTAATAGGCC 841860 >seq48 Length=2939403 Score = 111 bits (122), Expect = 8e-20 Identities = 84/101 (83%), Gaps = 8/101 (8%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAA--------TTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 |||||| ||||||| ||| |||||||||| | | |||||||| ||||||||| Sbjct 1452963 AATTAAAAAAAAATAAAACTAAAATATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCG 1453022 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| ||||||||||||||| |||| Sbjct 1453023 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 1453063 >seq368 Length=1167213 Score = 109 bits (120), Expect = 3e-19 Identities = 76/86 (88%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 11445 AAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| || | ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 200877 AAAAATAAATTATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 200818 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 200817 GCTCTAACCAACTGAGCTAATAGGCC 200792 >seq1290 Length=174460 Score = 107 bits (118), Expect = 1e-18 Identities = 75/85 (88%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| || ||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 111813 AAAAATAAA--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 111870 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||||| |||| Sbjct 111871 CTCTAACCAACTGAGCTAATAGGCC 111895 >seq939 Length=399370 Score = 107 bits (118), Expect = 1e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 385026 ATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 385085 Query 11514 ACTGAGCTAATGGGCC 11529 ||||||||||| |||| Sbjct 385086 ACTGAGCTAATAGGCC 385101 >seq720 Length=603908 Score = 107 bits (118), Expect = 1e-18 Identities = 76/87 (87%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||||| | ||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 61058 TAAAAAATACA--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 61115 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||||||||||||||| |||| Sbjct 61116 CGCTCTAACCAACTGAGCTAATAGGCC 61142 >seq308 Length=1308833 Score = 107 bits (118), Expect = 1e-18 Identities = 80/93 (86%), Gaps = 1/93 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||||| | |||||| ||||||||| | | |||||||| |||||||||||||||||||| Sbjct 1096551 AATAACATATCAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCA 1096492 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCCGTC 11532 ||||||||| ||||||| ||||||| |||| || Sbjct 1096491 CGACGCTCTAACCAACTAAGCTAATAGGCCATC 1096459 >seq50 Length=2914442 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 2270561 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 2270620 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 2270621 CAACTGAGCTAATAGGCC 2270638 >seq2081 Length=45935 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 3088 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 3147 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 3148 CTGAGCTAATAGGCC 3162 >seq1530 Length=99451 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 51503 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 51444 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 51443 CTGAGCTAATTGGCC 51429 >seq233 Length=1527260 Score = 93.3 bits (102), Expect = 2e-14 Identities = 75/89 (84%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 11447 AAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCT 11506 |||| ||||||||||||| | | |||||||| |||||||| ||||| ||||| |||||| Sbjct 1436532 AAAT-AAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCACGTTACTAGCAAGACGCT 1436474 Query 11507 CTRACCAACTGAGCTAATGGGCCG-TCGA 11534 || ||| ||||||| ||| ||||| |||| Sbjct 1436473 CTAACCCACTGAGCCAATAGGCCGCTCGA 1436445 >seq840 Length=481012 Score = 82.4 bits (90), Expect = 4e-11 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||||| | ||||| | |||| || || |||||||||||||||||| |||| | Sbjct 279658 TGGCCCATGAAGGTTTCGAAATTGCGACATTAGCTTTATTAGCACGACGCTCTAACCAGC 279599 Query 11516 TGAGCTAATGGGCC 11529 ||||| |||||||| Sbjct 279598 TGAGCCAATGGGCC 279585 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261467451042352