Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq654 159 5e-35 seq318 152 8e-33 seq431 150 3e-32 seq725 149 1e-31 seq195 145 1e-30 seq465 141 1e-29 seq3030 138 2e-28 seq1274 129 9e-26 seq1669 120 5e-23 seq65 120 5e-23 seq82 96.9 5e-16 seq912 95.1 2e-15 >seq654 Length=692898 Score = 159 bits (176), Expect = 5e-35 Identities = 197/267 (74%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| | || ||||| ||||| |||||||| || || |||||||| || Sbjct 110723 GCCAAGCGTCACCGCAAGGTC-CTTCGCGATAATATCCAAGGCATTACAAAGCCAGCAAT 110781 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||| ||||||| | ||||| || |||||| || ||| || ||||||| |||| Sbjct 110782 TCGCCGTTTGGCTCGAAGAGGTGGTGTGAAGCGTATCAGTGGTTTAATCTATGAGGAGAC 110841 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||||||||||| ||| || ||| |||||| | || ||||| Sbjct 110842 CCGTGGTGTCCTCAAGATCTTCCTTGAGAATGTGATCAGAGATGCTGTGACGTACACCGA 110901 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| ||||||||||| || |||||||| | || |||||| |||| | || || Sbjct 110902 ACACGCTCGCCGTAAGACTGTTACAGCCATGGATGTGGTGTATGCACTGAAGAGACAGGG 110961 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTA 16698 | | ||||||| ||||| |||| Sbjct 110962 TAGAACCCTTTATGGATTTGGTGGTTA 110988 >seq318 Length=1283128 Score = 152 bits (168), Expect = 8e-33 Identities = 194/267 (73%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||||||||| | | ||| || |||||||| || |||||||||||||| || || Sbjct 673380 GCTAAGCGTCACAGGAAGGTTCTCCGCGATAACATTCAGGGAATCACCAAGCCTGCGATT 673439 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| ||||||||| | ||||| || ||| | || ||||||| | || || |||| | Sbjct 673440 CGTCGGCTGGCTCGTAGAGGTGGCGTGAAGAGGATCAGTGGATTGATTTACGAGGAGACT 673499 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| ||||||| ||| | ||| || |||| ||||||| | ||| || ||| Sbjct 673500 CGCGGAGTTCTGAAGATTTTCTTGGAGAATGTGATCCGTGATGCTGTGACCTACACTGAG 673559 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| | | | ||||| || || | |||||| | || ||||||||||| | || || Sbjct 673560 CACGCGAGAAGAAAGACGGTGACTGCTATGGATGTGGTGTATGCATTGAAGAGGCAGGGA 673619 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | ||||| ||||| ||||| Sbjct 673620 AGGACTCTATATGGGTTTGGTGGTTAA 673646 >seq431 Length=1044228 Score = 150 bits (166), Expect = 3e-32 Identities = 195/267 (73%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| | || ||||| |||||||||||||| ||||| |||||||| || Sbjct 1024960 GCCAAGCGTCACCGCAAGGTC-CTTCGCGATAACATCCAAGGCATCACAAAGCCAGCAAT 1025018 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||| ||||||| | ||||| || || || || ||| || |||| || |||| Sbjct 1025019 TCGCCGTTTGGCTCGCAGAGGTGGCGTGAAACGAATCAGTGGTCTGATCTACGAGGAGAC 1025078 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || ||||||||||||| ||| || ||| || ||| | ||| || || Sbjct 1025079 CCGTGGAGTACTGAAGATCTTCCTTGAGAATGTGATCAGAGACGCTGTGACCTACACGGA 1025138 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || |||||||| || |||||||| | || |||||| ||||| | || || Sbjct 1025139 ACACGCCCGCCGCAAGACTGTAACAGCCATGGATGTGGTGTATGCACTGAAAAGGCAGGG 1025198 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTA 16698 | | | ||||||| ||||| |||| Sbjct 1025199 CAGGACTCTTTATGGGTTTGGTGGTTA 1025225 >seq725 Length=601724 Score = 149 bits (164), Expect = 1e-31 Identities = 181/247 (73%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || ||||||||||| |||||||||||||| || || |||||||||||||| | || Sbjct 54942 TCTCCGGGATAACATCCAGGGAATCACCAAGCCTGCGATTCGTCGTCTGGCTCGCAGAGG 54883 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 |||||||||| | || ||| ||| |||| || || | ||| | || |||||||| || Sbjct 54882 TGGAGTCAAGAGGATCAGTGGGTTGATCTACGAGGAAACTCGAGGAGTCTTGAAGATTTT 54823 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | | ||| || |||| |||||| | ||| || |||||||| | | | ||||| || Sbjct 54822 CTTGGAGAATGTGATCCGTGATGCCGTGACCTACACTGAGCACGCGAGAAGAAAGACAGT 54763 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | |||||| | || ||||| ||||| | || ||| | | |||| || || || Sbjct 54762 GACTGCTATGGATGTTGTGTATGCGTTGAAGAGGCAGGGCAGGACTCTTTACGGGTTCGG 54703 Query 16693 AAGTTAA 16699 ||||| Sbjct 54702 TGGTTAA 54696 >seq195 Length=1700378 Score = 145 bits (160), Expect = 1e-30 Identities = 179/245 (73%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || |||||||||||||| || |||||||| || ||||| || || ||||| | ||||| Sbjct 971352 CTCCGAGATAACATCCAGGGCATCACCAAACCTGCTATACGACGGCTGGCCAGGCGTGGC 971293 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| |||||| || || | | || || |||| | | | || ||||||||||| Sbjct 971292 GGAGTGAAGCGTATCAGCGGTCTTATTTACGAGGAGACTAGAGGCGTCCTGAAGATCTTC 971233 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| || | |||||| | ||| |||||||||||| || |||||||| Sbjct 971232 CTGGAGAACGTCATTCGTGATGCAGTTACCTACACCGAGCACGCTCGCCGCAAGACTGTT 971173 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || |||||||| |||| ||||||||||| | || ||| | | | || ||||| || Sbjct 971172 ACTGCCATGGATGTCGTGTATGCATTGAAGAGGCAGGGCAGGACTCTCTACGGTTTCGGT 971113 Query 16694 AGTTA 16698 |||| Sbjct 971112 GGTTA 971108 >seq465 Length=982041 Score = 141 bits (156), Expect = 1e-29 Identities = 191/266 (72%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || ||||| |||| | ||||| |||||||||||||| ||||| |||||||| || Sbjct 96554 GCCAAACGTCACCGCAAAGTCCTTCGGGATAACATCCAAGGCATCACAAAGCCAGCAATT 96613 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| |||| || | ||||| || |||||| || ||| || | |||||||||| Sbjct 96614 CGCCGTTTGGCACGCAGAGGTGGTGTGAAGCGTATCAGTGGTCTGATTTATGAAGAGACC 96673 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || | ||||||||||| ||| || || || || | ||| ||||| Sbjct 96674 CGTGGAGTACTCAAGATCTTCCTTGAGAATGTGATAAGAGACGCAGTGACCTACACCGAA 96733 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || |||||||| || |||||||| | || |||||| |||| | || || Sbjct 96734 CACGCTCGCCGCAAGACTGTTACAGCCATGGATGTGGTGTATGCACTGAAGAGACAGGGT 96793 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTA 16698 | | ||||||| ||||| |||| Sbjct 96794 AGAACCCTTTATGGGTTTGGTGGTTA 96819 >seq3030 Length=18591 Score = 138 bits (152), Expect = 2e-28 Identities = 190/266 (71%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || ||||| |||| | ||||| |||||||||||||| ||||| |||||||| || Sbjct 6451 GCCAAACGTCACCGCAAAGTCCTTCGTGATAACATCCAAGGCATCACAAAGCCAGCAATT 6392 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| ||||||| | ||||| || |||||| || ||| || | |||||||||| Sbjct 6391 CGCCGTTTGGCTCGCAGAGGTGGTGTGAAGCGTATCAGTGGTCTGATTTATGAAGAGACC 6332 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || | ||||| || || ||| || || || || | ||| ||||| Sbjct 6331 CGTGGAGTGCTCAAGATATTTCTTGAGAATGTGATAAGAGACGCAGTGACCTACACCGAA 6272 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || |||||||| || |||||||| | || |||||| |||| | || ||| Sbjct 6271 CACGCTCGCCGGAAGACTGTTACAGCCATGGATGTGGTTTATGCACTGAAGAGACAGGGC 6212 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTA 16698 | | | ||||| ||||| |||| Sbjct 6211 AGAACCCTATATGGGTTTGGTGGTTA 6186 >seq1274 Length=180729 Score = 129 bits (142), Expect = 9e-26 Identities = 173/241 (72%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 ||||||| || ||||| ||||||||||| || || |||||| ||||||| | ||||| | Sbjct 160498 GAGATAATATTCAAGGCATCACCAAGCCTGCAATTCGTCGTTTGGCTCGCAGAGGTGGTG 160439 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | ||| | || ||| ||| ||||||| || | ||||| || ||||||||||| | Sbjct 160438 TGAAGAGGATCAGTGGCTTGATCTATGAGGAAACTCGTGGAGTCCTGAAGATCTTCTTGG 160379 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| |||| ||||||| | ||||| ||||| || | | ||||| || || Sbjct 160378 AGAACGTGATCCGTGATGCTGTGACTTATACTGAGCATGCCAGGAGAAAGACAGTTACTG 160319 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | |||||| | || ||||| | || | || || | | | ||||||||||| ||| Sbjct 160318 CGATGGATGTGGTTTATGCGCTCAAGAGGCAGGGAAGGACTCTGTATGGTTTTGGGGGTT 160259 Query 16698 A 16698 | Sbjct 160258 A 160258 >seq1669 Length=78983 Score = 120 bits (132), Expect = 5e-23 Identities = 171/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||| ||||| || || ||||| || || |||||| |||| ||| | ||||| | Sbjct 30589 GAGATAACATTCAAGGTATAACTAAGCCTGCAATTCGTCGTTTGGCCCGTAGAGGTGGTG 30530 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | ||| | | ||| ||| | ||||| || | ||||| || | ||||||||| | Sbjct 30529 TGAAGAGGATTAGTGGCTTGATTTATGAGGAAACTCGTGGAGTCCTCAAGATCTTCTTGG 30470 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| || | ||||||| | || || |||||||||| | |||||||| || Sbjct 30469 AGAACGTGATTCGTGATGCTGTGACTTACACTGAGCACGCTAGGAGAAAGACTGTTACTG 30410 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| | || ||||| | || | || || | | | ||||||||||| ||| Sbjct 30409 CCATGGATGTGGTGTATGCCCTCAAGAGGCAGGGAAGGACTCTGTATGGTTTTGGGGGTT 30350 Query 16698 A 16698 | Sbjct 30349 A 30349 >seq65 Length=2714061 Score = 120 bits (132), Expect = 5e-23 Identities = 174/246 (71%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || |||||||| ||||| ||||||||||| || || || || |||||| | |||||| Sbjct 717826 CTCCGGGATAACATTCAAGGCATCACCAAGCCTGCCATTCGGCGACTGGCTAGGCGTGGT 717767 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 |||||||| || || || | |||| || |||| | | | || | |||||||| Sbjct 717766 GGAGTCAAACGCATCAGCGGTCTCATCTACGAGGAGACTAGAGGCGTCCTCAAGATCTTT 717707 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| || || | || || | ||| ||||| |||||| || ||||| || Sbjct 717706 CTCGAGAATGTCATTCGGGACGCCGTTACCTACACCGAACACGCTCGTCGCAAGACCGTT 717647 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || |||||||| | || ||||| ||||| | || || | | | ||||||||||| Sbjct 717646 ACTGCCATGGATGTTGTATATGCCTTGAAGAGGCAGGGGAGGACTCTCTATGGTTTTGGT 717587 Query 16694 AGTTAA 16699 ||||| Sbjct 717586 GGTTAA 717581 >seq82 Length=2550367 Score = 96.9 bits (106), Expect = 5e-16 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||| || || ||||| ||||| || ||||||||||| |||||| | || || || Sbjct 906215 GATAACATTCAGGGGATCACGAAGCCGGCAATCCGTCGTCTAGCTCGTAGAGGAGGCGTA 906156 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || ||| || | ||||| |||| | | || | ||||||||||| | Sbjct 906155 AAGCGTATCAGTGGCCTGATTTATGAGGAGACCAGAGGCGTACTCAAGATCTTCCTTGAA 906096 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || || | |||||| || || || || || || | | ||||| || || || Sbjct 906095 AATGTGATTCGGGATGCTGTCACTTACACTGAACATGCCCGAAGAAAGACCGTAACTGCC 906036 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 |||||| | || || || | || | || || || | | | ||||| ||||| Sbjct 906035 ATGGATGTTGTGTACGCTCTCAAGAGGCAGGGTCGGACGCTCTATGGCTTTGG 905983 >seq912 Length=418790 Score = 95.1 bits (104), Expect = 2e-15 Identities = 169/247 (68%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||| | || ||||| || ||||| || ||||| || ||| || | || || || Sbjct 280557 GATAACATCTAGGGGATCACGAAACCAGCGATTCGTCGGCTTGCTTGTAGAGGAGGCGTG 280498 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || ||| | | || ||||||| | | ||| | ||||||||||| | Sbjct 280497 AAGCGTATCAGTGGCCTCATTTACGAAGAGACCAGAGGCGTTCTCAAGATCTTCCTTGAC 280438 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || || | |||||| | || || | || || || | ||||| || ||| || Sbjct 280437 AATGTGATTCGCGATGCTGTAACTTACACTAAACATGCACAAAGAAAGACCGTAACCGCC 280378 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | |||||||| | || | || || || | | ||||||||||||| ||| | Sbjct 280377 ATGCACGTTGTCTATGCTCTCAAGAGGCAGGGTCGGACGCTTTATGGTTTTGGTGGTTGA 280318 Query 16700 TCTTCTA 16706 | || || Sbjct 280317 TTTTGTA 280311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79068386584236