Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq345 529 5e-146 seq43 482 7e-132 seq404 432 1e-116 seq1475 91.5 4e-14 seq1225 91.5 4e-14 >seq345 Length=1218342 Score = 529 bits (586), Expect = 5e-146 Identities = 671/915 (73%), Gaps = 6/915 (1%) Strand=Plus/Minus Query 19370 TGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGATATAGATGGCAT 19429 ||| ||| || ||||| || | || || || || || || |||||||| ||||| || Sbjct 658081 TGCAACTTCTGTATTTATTATCTCTTTCATTGCTGCCCCTCCAGTAGATATTGATGGTAT 658022 Query 19430 ACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCTGGAGCAGTAGT 19489 ||||| || ||||| | || || | || |||||||||||||||||||| || | | Sbjct 658021 TCGTGAACCTGTTTCTAGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTAT 657962 Query 19490 TCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCCGGCA-CTTTAG 19548 ||| | || | || ||||| |||| ||||| || || |||||||| |||| | | | Sbjct 657961 TCCTACTTCTACAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGC-GGCATCCGTTG 657903 Query 19549 ATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAATAGGAG 19608 |||| ||||||||||| |||||||| ||| | || |||| | ||||||||| | || | Sbjct 657902 ATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTG 657843 Query 19609 TAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGAATGAGACCATGGA 19668 |||| ||| ||| | |||||||||| || | | || || ||| | || |||| Sbjct 657842 TAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGCCCTTGGA 657783 Query 19669 TATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCG-TTTACCCA 19727 | || |||||| |||| || | |||| ||| |||||| ||||| | |||| ||| Sbjct 657782 TTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCTTGATTTATCCA 657724 Query 19728 TTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTT 19787 |||| || || || ||| ||||||||||||||| || |||||||||||||| |||||| Sbjct 657723 ATTGGTCAGGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTT 657664 Query 19788 ATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTT 19847 ||| | |||||||| || || ||||| ||||||||||| || || |||||| | || || Sbjct 657663 ATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTA 657604 Query 19848 GCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTCCTCG 19907 ||||| |||||||| || || || ||| ||||||||| || ||||| || || Sbjct 657603 GCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGT 657544 Query 19908 ATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGAT 19967 | |||| |||||| || || ||| ||| || | || || | ||||| ||||| Sbjct 657543 TTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAG 657484 Query 19968 GAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATAT 20027 ||||| || |||||||| || ||||| || || || ||||| ||||||| || |||||| Sbjct 657483 GAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATAT 657424 Query 20028 GCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGC 20087 ||| || ||| || ||||||| ||| |||||||| | |||||||| || || || || Sbjct 657423 GCTAGTTCCAACAACTCTCGTTTTTTGCATTTCTTCTTAGCTACTTTGCCTGTAGTAGGT 657364 Query 20088 ATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTT 20147 || ||| | | | | || || ||||||||| ||||||||| |||| ||| || || Sbjct 657363 ATTTGGTTCATTGCTTTAGGTATTAGCACTATGGTTTTCAACCTAAATGATTTCAATTTC 657304 Query 20148 AACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAACATGGGCTGATGTATTAAA 20206 ||||| || ||||||||| ||||| || | |||| || ||||||||| | | || Sbjct 657303 AACCAATCTGTAGTTGATAGTCAA-GGTCATGTAATTAATACCTGGGCTGATATTATTAA 657245 Query 20207 TAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAACTTCCCACTTGA 20266 | |||||||| || | ||||||||||| || || ||||||||||||||||| || || Sbjct 657244 CCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGA 657185 Query 20267 TTTAGCTTCGGCTGA 20281 ||||| | | ||| Sbjct 657184 CCTAGCTGCTGTTGA 657170 >seq43 Length=3080068 Score = 482 bits (534), Expect = 7e-132 Identities = 566/760 (74%), Gaps = 4/760 (1%) Strand=Plus/Minus Query 19413 GTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATT 19472 |||||||| ||||| || ||||| || ||||| || || || | || |||||||||||| Sbjct 2031173 GTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATT 2031114 Query 19473 ATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGG 19532 |||||||| || | |||| | || || ||||| |||| ||||| || || ||| Sbjct 2031113 ATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAATATGG 2031054 Query 19533 GAAGCCGGCA-CTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTT 19591 ||||| |||| | | ||||| |||||||| || ||| |||| ||| | || |||| || Sbjct 2031053 GAAGC-GGCATCCGTTGATGAATGGTTATATAATGGCAGTCCTTATGAGCTAATTGTTTT 2030995 Query 19592 CCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATT 19651 ||||||||| | || ||||| ||| ||| | |||||||||| || | | | Sbjct 2030994 ACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCT 2030935 Query 19652 AGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGT 19711 || ||| | || ||||| || |||||| |||| || | |||| ||| |||||| Sbjct 2030934 GGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT 2030875 Query 19712 GTTTCTCG-TTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCT 19770 ||||| | |||| ||| |||| || || || ||| ||||||||||||||| || |||| Sbjct 2030874 -TTTCTTGATTTATCCAATTGGTCAGGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCT 2030816 Query 19771 CTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGT 19830 |||||||||| ||||||||| | |||||||| || || ||||| ||||||||||| || | Sbjct 2030815 CTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCAT 2030756 Query 19831 TCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAA 19890 | |||||| | || || ||||| |||||||| || || || ||| ||||||||| || Sbjct 2030755 TTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTT 2030696 Query 19891 GTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCT 19950 ||||| || || | |||| |||||| || || ||| ||| || | || | Sbjct 2030695 CCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTT 2030636 Query 19951 ATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGA 20010 | | ||||| ||||| ||||| || |||||||| || ||||| || || || ||||| Sbjct 2030635 ACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCC 2030576 Query 20011 GATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTA 20070 ||||||| || ||||||||| |||||| || |||||||||||||||||||| || ||| Sbjct 2030575 GATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTG 2030516 Query 20071 CTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACC 20130 ||| || || || || || ||| | || | | || || |||||||||||||||||| Sbjct 2030515 CTTGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACC 2030456 Query 20131 TTAATGGTTTTAACTTTAACCAGTCAGTAGTTGATGTCAA 20170 | |||||||| || || ||||| || |||||||||||||| Sbjct 2030455 TAAATGGTTTCAATTTCAACCAATCTGTAGTTGATGTCAA 2030416 >seq404 Length=1096556 Score = 432 bits (478), Expect = 1e-116 Identities = 538/729 (74%), Gaps = 6/729 (1%) Strand=Plus/Minus Query 19548 GATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAATAGGA 19607 ||||| ||||||||||| |||||||| ||| | || |||| | ||||||||| | || Sbjct 544499 GATGAATGGTTATACAATGGCGGTCCTTATAAGCTAATTGTTCTACACTTCTTACTTGGT 544440 Query 19608 G-TAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGAATGAGACCATG 19666 | || ||| || | |||||||||| || | | || || ||| | || || Sbjct 544439 GATATATATATATATATATATA-AGTGGGAACTTAGTTTCCGTTTGGGTATGCGCCCTTG 544381 Query 19667 GATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCG-TTTACC 19725 ||| | |||||| ||||||| | || | ||| |||||| ||||| | |||| | Sbjct 544380 GATTACTATTGCATATTCAGCACCTGTTGCAACTGCTACTGCTGT-TTTCTTGATTTATC 544322 Query 19726 CATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACT 19785 || |||| || || || ||| ||||||||||||||| || |||||||||||||| |||| Sbjct 544321 CAATTGGTCAGGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACT 544262 Query 19786 TTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTG 19845 ||||| | |||||||| || || ||||| ||||||||||| || || |||||| | || | Sbjct 544261 TTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCG 544202 Query 19846 TTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTCCT 19905 | ||||| |||||||| || || || ||| ||||||||| || ||||| || || Sbjct 544201 TAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTA 544142 Query 19906 CGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAG 19965 | |||| |||||| || || ||| ||| || | || || | ||||| |||| Sbjct 544141 GTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAG 544082 Query 19966 ATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAAT 20025 | ||||| || |||||||| || ||||| || || || ||||| ||||||| || |||| Sbjct 544081 AGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAAT 544022 Query 20026 ATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTG 20085 ||||| |||||| || |||||||||||||||||||| || ||| ||| || | || | Sbjct 544021 ATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGAAGTAG 543962 Query 20086 GCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACT 20145 | || ||||| || | | || || ||||||||||||||||||| |||||||| || | Sbjct 543961 GTATTTGGCTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATT 543902 Query 20146 TTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAACATGGGCTGATGTATTA 20204 | ||||| || ||||||||| ||||| || |||| || ||||||||| | | Sbjct 543901 TCAACCAATCTGTAGTTGATAGTCAA-GGTCGTGTAATTAATACCTGGGCTGATATTATT 543843 Query 20205 AATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAACTTCCCACTT 20264 || | |||||||| || | ||||||||||| || || ||||||||||||||||| || Sbjct 543842 AACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTA 543783 Query 20265 GATTTAGCT 20273 || ||||| Sbjct 543782 GACCTAGCT 543774 Score = 98.7 bits (108), Expect = 3e-16 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 19332 GGTTGGTTTGGAGTACTTATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTC 19391 || |||||||| || | ||||| ||| ||| | | || ||| || ||||| || Sbjct 545931 GGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATC 545872 Query 19392 GCCTTTATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCG 19451 || || || || || || || |||||||| ||||| || ||||| || ||||| || || Sbjct 545871 GCTTTCATTGCTGCCCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 545812 Query 19452 TTAATGTACGGAAACAATATTATTTCTGGAGCAG 19485 || | || |||||||||||||||||||| |||| Sbjct 545811 CTACTTTATGGAAACAATATTATTTCTGGTGCAG 545778 >seq1475 Length=110218 Score = 91.5 bits (100), Expect = 4e-14 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 20011 GATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTA 20070 ||||||| || ||||||||| |||||| || |||| |||| |||||||| | | || Sbjct 47110 GATTGATCTTCCAATATGCTAGTTTCAACAACTCTCTGTCTTCACATTTCTCTATATCTG 47169 Query 20071 CTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACC 20130 ||| || | || || || ||| | | | | || || |||||||||||||||||| Sbjct 47170 CTTGGCCTATAGTAGGTATTTGGTTCATTGCTTTAGGTATTAGCACTATGGCTTTCAACC 47229 Query 20131 TTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT 20165 | ||||||||| | || ||| | || | | ||||| Sbjct 47230 TAAATGGTTTTGATTTCAACTAATCCGCATTTGAT 47264 >seq1225 Length=211548 Score = 91.5 bits (100), Expect = 4e-14 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 19969 AAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATATG 20028 |||| || ||||||||||| |||||||| | || ||||| ||||||| || |||||| Sbjct 11170 AAGAAACTTATAATATTGTAGCTGCACATAGTTATTTTGGCCGATTGATCTTCTAATATG 11111 Query 20029 CTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTT 20073 || |||||| || |||| ||||||| ||||||| | ||| ||| Sbjct 11110 CTAGTTTCAACAACTCTCATTCTTTATATTTCTTCTTAGCTGCTT 11066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144428818001712