Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq345 479 5e-130 seq43 414 2e-110 seq404 399 4e-106 >seq345 Length=1218342 Score = 479 bits (530), Expect = 5e-130 Identities = 633/878 (72%), Gaps = 0/878 (0%) Strand=Plus/Minus Query 211675 TTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTC 211734 ||||| || || ||||| || ||||| || || || |||||||| || || | || | Sbjct 658056 TTCATTGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTAGATCTCTA 657997 Query 211735 ATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTA 211794 | ||||| ||||| || || |||||||| || |||| |||| | || || ||||| Sbjct 657996 CTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTACAGCTATAGGTTTG 657937 Query 211795 CACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCT 211854 || || || || || |||||||| ||| | ||||||| ||| | |||||||| |||||| Sbjct 657936 CATTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCT 657877 Query 211855 TACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTGG 211914 || || | | | | |||||| | | || | | |||||||| | ||||| Sbjct 657876 TATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 657817 Query 211915 GAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTA 211974 |||||| | |||||| |||||||| |||||||| |||||| |||||||| ||||| Sbjct 657816 GAACTTAGTTTCCGTTTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTT 657757 Query 211975 TCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGT 212034 |||| ||| ||||| ||| | |||| ||| | |||||||| || || || ||| Sbjct 657756 GCAGCTGCTACTGCTGTTTTCTTGATTTATCCAATTGGTCAGGGAAGCTTTTCTGATGGT 657697 Query 212035 ATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAAC 212094 |||||| |||| || || || || |||||||| ||| | |||||||| || || || ||| Sbjct 657696 ATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAAC 657637 Query 212095 ATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTC 212154 ||||||||||||||||| || ||| ||| || || ||| | ||||| || | ||||| Sbjct 657636 ATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTC 657577 Query 212155 TCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTAGAT 212214 ||||||||| ||||| | || || ||| | ||| | |||||||| | || Sbjct 657576 AGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAA 657517 Query 212215 TCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCA 212274 || || | ||||||| ||||| ||||| ||||| || ||||| ||||| ||||| Sbjct 657516 TCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCT 657457 Query 212275 CATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTA 212334 ||||| || || || || | |||||||| ||||| | ||||||| | ||| Sbjct 657456 CATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTCCAACAACTCTCGTTTTTTG 657397 Query 212335 CACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGC 212394 || |||||| | || | | |||||| | || | ||||| | || | ||||| || Sbjct 657396 CATTTCTTCTTAGCTACTTTGCCTGTAGTAGGTATTTGGTTCATTGCTTTAGGTATTAGC 657337 Query 212395 ACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGT 212454 || |||| ||||||||||||| ||||| ||||||||||| || |||||| |||| Sbjct 657336 ACTATGGTTTTCAACCTAAATGATTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGT 657277 Query 212455 AAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATG 212514 | || || ||| |||| |||| || ||||| | || ||||||||||||||||||||| Sbjct 657276 CATGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATG 657217 Query 212515 CACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552 || ||| | ||||| || |||||||| || ||| |||| Sbjct 657216 CATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 657179 >seq43 Length=3080068 Score = 414 bits (458), Expect = 2e-110 Identities = 544/754 (72%), Gaps = 0/754 (0%) Strand=Plus/Minus Query 211693 GTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAACAACATC 211752 || ||||| || || || |||||||| || |||| || | | ||||| ||||| || Sbjct 2031173 GTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATT 2031114 Query 211753 ATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCCTATCTGG 211812 || |||||||| || |||| |||| || || ||||| || || || || || ||| Sbjct 2031113 ATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAATATGG 2031054 Query 211813 GAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTACCAGTTGGTAATCTTC 211872 ||||| ||| | ||||||| ||| | || ||||| ||||||| || | | | || Sbjct 2031053 GAAGCGGCATCCGTTGATGAATGGTTATATAATGGCAGTCCTTATGAGCTAATTGTTTTA 2030994 Query 211873 CACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTGGGAACTTTCATACCGTTTA 211932 |||||| | | || | | |||||||| | ||||||||||| | |||| | Sbjct 2030993 CACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTG 2030934 Query 211933 GGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTTCGCTGTA 211992 |||||||| |||||||| |||||| |||||||| ||||| |||| ||| ||||| Sbjct 2030933 GGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 2030874 Query 211993 TTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTATATCA 212052 ||| | |||| ||| | |||||||| || || || ||||||||| |||| || || Sbjct 2030873 TTCTTGATTTATCCAATTGGTCAGGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCT 2030814 Query 212053 GGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCACCCATTC 212112 || || |||||||| ||| | |||||||| || || || |||||||||||||||||||| Sbjct 2030813 GGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTT 2030754 Query 212113 CATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACGGTTCT 212172 || ||| ||| || || ||| | ||||| || | ||||| ||||||||| ||||| Sbjct 2030753 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCC 2030694 Query 212173 CTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTAGATTCACAGAACTATGGTTAC 212232 | || || ||| | ||| | |||||||| | || || || | |||||| Sbjct 2030693 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTAC 2030634 Query 212233 AAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTCGGTAGA 212292 | ||||| ||||| ||||| || ||||| ||||| ||||| ||||| || || || || Sbjct 2030633 AGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGA 2030574 Query 212293 CTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTCGCATCA 212352 | |||||||| ||||| ||||||||| | |||||| |||||||| || | Sbjct 2030573 TTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCT 2030514 Query 212353 TGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACCTA 212412 |||||||| | || | ||||| || || | ||||| |||| ||||| ||||||||| Sbjct 2030513 TGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTA 2030454 Query 212413 AATGGATTCAACTTCAACCAATCAGTTGTTGATG 212446 ||||| ||||| ||||||||||| || ||||||| Sbjct 2030453 AATGGTTTCAATTTCAACCAATCTGTAGTTGATG 2030420 >seq404 Length=1096556 Score = 399 bits (442), Expect = 4e-106 Identities = 527/728 (72%), Gaps = 2/728 (0%) Strand=Plus/Minus Query 211826 TTGATGAGTGGCTCTACAATGGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCG 211885 ||||||| ||| | |||||||| |||||||| || | | | | |||||| | | | Sbjct 544501 TTGATGAATGGTTATACAATGGCGGTCCTTATAAGCTAATTGTTCTACACTTCTTACTTG 544442 Query 211886 GA-ATCTCAGCATACATGGGAAGACAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCT 211944 | || | ||| || | | ||||||||||| | |||||| |||||||| ||| Sbjct 544441 GTGATATATATATATATATATATA-AGTGGGAACTTAGTTTCCGTTTGGGTATGCGCCCT 544383 Query 211945 TGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTAC 212004 ||||| | |||| |||||||||||||| || | ||| ||||| ||| | |||| Sbjct 544382 TGGATTACTATTGCATATTCAGCACCTGTTGCAACTGCTACTGCTGTTTTCTTGATTTAT 544323 Query 212005 CCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAAC 212064 ||| | |||||||| || || || ||||||||| |||| || || || || |||||| Sbjct 544322 CCAATTGGTCAGGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAAC 544263 Query 212065 TTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCACCCATTCCATATGGCAGGT 212124 || ||| | |||||||| || || || |||||||||||||||||||| || ||| ||| Sbjct 544262 TTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGC 544203 Query 212125 GTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACGGTTCTCTTGTTACATCT 212184 || || ||| | ||||| || | ||||| ||||||||| ||||| | || || ||| Sbjct 544202 GTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCT 544143 Query 212185 TCACTTATCCGTGAAACCACTGGTTTAGATTCACAGAACTATGGTTACAAGTTCGGACAA 212244 | ||| | |||||||| | || || || | ||||||| ||||| ||| Sbjct 544142 AGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAA 544083 Query 212245 GAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAG 212304 || ||||| || ||||| ||||| ||||| ||||| || || || || | |||||||| Sbjct 544082 GAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAA 544023 Query 212305 TATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTCGCATCATGGCCTGTTATC 212364 ||||| ||||||||| | |||||| |||||||| || | ||||||| | Sbjct 544022 TATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGAAGTA 543963 Query 212365 TGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACCTAAATGGATTCAAC 212424 || | ||| | || || | ||||| |||| ||||| |||||||||||||| ||||| Sbjct 543962 GGTATTTGGCTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAAT 543903 Query 212425 TTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTT 212484 ||||||||||| || |||||| |||| || || ||| |||| |||| || || Sbjct 543902 TTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATT 543843 Query 212485 AACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATGCACACAACTTCCCACTT 212544 ||| | || ||||||||||||||||||||||| ||| | ||||| || |||||||| || Sbjct 543842 AACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTA 543783 Query 212545 GACTTAGC 212552 ||| |||| Sbjct 543782 GACCTAGC 543775 Score = 84.2 bits (92), Expect = 4e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAGCTGCAACAACATGCTTTATCG 211669 |||| |||||||||||| | |||||||| | | | | ||||| | ||||| Sbjct 545933 TTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTA 545874 Query 211670 TAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTT 211729 | || ||||| || || ||||| || ||||| || || || |||||||| || |||| | Sbjct 545873 TCGCTTTCATTGCTGCCCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGAT 545814 Query 211730 CATTCATGTATGGTAACAACATCATCTCTGGTGCAG 211765 | | | ||||| ||||| || || |||||||||| Sbjct 545813 CTCTACTTTATGGAAACAATATTATTTCTGGTGCAG 545778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807479976233120