Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq509 91.5 1e-13 seq154 82.4 7e-11 >seq509 Length=920718 Score = 91.5 bits (100), Expect = 1e-13 Identities = 109/147 (74%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 ||||| ||||| || ||||| ||||| || ||| | |||| | || |||||| | ||| Sbjct 59799 GACAAGGAAGGCATTCCTCCTGATCAGCAGAGATTAATTTTTGCTGGGAAACAATTGGAA 59858 Query 26922 GATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 |||| ||||| | | || || ||||| || || || || ||| | || ||||| || Sbjct 59859 GATGGTAGAACCCTTTCTGATTACAACATCCAGAAGGAGTCAACTCTTCACCTGGTTTTG 59918 Query 26982 AGACTTAGAGGAGGAAAAATATGATTA 27008 || ||||||||||| || |||||||| Sbjct 59919 AGGCTTAGAGGAGG--AACTATGATTA 59943 Score = 91.5 bits (100), Expect = 1e-13 Identities = 109/147 (74%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 ||||| ||||| || ||||| ||||| || ||| | |||| | || |||||| | ||| Sbjct 62240 GACAAGGAAGGCATTCCTCCTGATCAGCAGAGATTAATTTTTGCTGGGAAACAATTGGAA 62299 Query 26922 GATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 |||| ||||| | | || || ||||| || || || || ||| | || ||||| || Sbjct 62300 GATGGTAGAACCCTTTCTGATTACAACATCCAGAAGGAGTCAACTCTTCACCTGGTTTTG 62359 Query 26982 AGACTTAGAGGAGGAAAAATATGATTA 27008 || ||||||||||| || |||||||| Sbjct 62360 AGGCTTAGAGGAGG--AACTATGATTA 62384 >seq154 Length=1955999 Score = 82.4 bits (90), Expect = 7e-11 Identities = 112/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||| |||||||| | |||||| ||||| ||||| ||||| || || |||||||| Sbjct 1203345 CGATACCATCGATAACGTCAAAGCCAAGATCCAAGACAAGGAAGGAATTCCACCCGATCA 1203286 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATA 26946 || ||| | || | || |||||| || || ||||| | | | ||| || ||||||| Sbjct 1203285 GCAGAGATTGATCTTCGCCGGCAAGCAGCTTGAAGACGGCCGCA-CGTTGGCTGACTATA 1203227 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||| || || || || ||| | ||||| ||||| Sbjct 1203226 ACATCCAGAAGGAGTCCACTCTTCATCTCGTCCT 1203193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478617812597440