Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq320 109 1e-18 seq755 102 2e-16 seq1752 95.1 3e-14 seq153 93.3 1e-13 seq46 86.0 2e-11 >seq320 Length=1281786 Score = 109 bits (120), Expect = 1e-18 Identities = 166/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||||||| | ||||| || ||| ||| ||||| || ||||| || | ||| | Sbjct 82026 TGCTTTCTTGTGTGCATGAAAGATGATAGCATTGAGGGCATATTTGATACTTTGAAGGAG 81967 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 |||||| ||||| |||| || || ||||||||| | || | || ||| ||||||| Sbjct 81966 TGTGCTGTTATTAGCAAGCTAGCTGGAGGAATTGGTCTTTCTGTGCATAATATTCGTGCT 81907 Query 363727 -CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785 ||| |||||||||||| || | | || || ||||| | |||| |||||| | Sbjct 81906 GCAGG-CAGTTACATTCGTGGGATAAATGGGAGTTCCAATGGCATTATTCCTATGCTTAG 81848 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 |||||| | | |||||| | |||| || || |||||||| ||| | ||||| Sbjct 81847 AGTGTTTAATGACACTGCGCGCTACGCTGATCAAGGTGGAGGTAAGAGGAAAGG 81794 >seq755 Length=570705 Score = 102 bits (112), Expect = 2e-16 Identities = 162/227 (71%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || ||| || || || || | ||| || | ||| | |||||| |||| Sbjct 116608 ATGAAAGATGATAGTATTGAAGGCATATATGATACTTTGAAGGAGTGTGCTGTTATCAGT 116549 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACAT 363740 || |||||| ||||||||||| || | |||||| ||||||| || | ||||| || Sbjct 116548 AAATCTGCAGGAGGAATTGGTGTCTCCGTTCACAATATTCGTGCTACTG-GTAGTTATAT 116490 Query 363741 TCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATA 363799 ||| || || | |||| | || ||||| | ||||||||| | |||||||| | ||| Sbjct 116489 TCGTGGAACAAATGGGACA-TCTAATGGCATTGTTCCCATGTTACGTGTGTTCAATGATA 116431 Query 363800 CTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 |||| |||| || || || || ||||| ||| | ||||| | |||| Sbjct 116430 CTGCACGGTATGTTGATCAAGGAGGAGGCAAGAGGAAAGGTGTGTTT 116384 >seq1752 Length=70440 Score = 95.1 bits (104), Expect = 3e-14 Identities = 125/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 22483 TTCGCGGAACGTCTTATTGCATTTGC-TGTGGTTGAAGGCATTTTCTTTTCTGGAGCATT 22541 || ||||| | || || || ||||| |||| | || || || || ||||||||| || Sbjct 24692 TTTGCGGAGAGGCTGATCGCTTTTGCCTGTG-TGGAGGGAATATTTTTTTCTGGAAGCTT 24634 Query 22542 TTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGA 22601 ||| || || ||||||||||| || |||| | |||||||| |||| || ||||| || Sbjct 24633 TTGCGCGATATTTTGGCTAAAGAAGCGTGGCTTGATGCCGGGATTAACATTCTCAAACGA 24574 Query 22602 GTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATA 22652 ||| || ||||||||||| | || || || |||||| ||||||| Sbjct 24573 GTTGATCTCGCGAGATGAGGGCTTGCACTGTGACTTCGCGTGTTTGCTATA 24523 >seq153 Length=1958124 Score = 93.3 bits (102), Expect = 1e-13 Identities = 95/123 (77%), Gaps = 1/123 (1%) Strand=Plus/Minus Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 ||||||||||| | | ||| | || | || |||||||||||||| ||||||||||| Sbjct 333179 CAGTTTTATGTGGCCAATGGGGAG-TTACCTGTCAAATGTATCAGCGCTCTGCTGATATG 333121 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 |||||||| || || ||||| |||||| ||| || | || |||||| | || |||||| Sbjct 333120 GGTCTTGGAGTCCCATTTAACATTGCATCTTATGCTTTGCTGACTTGCATGATTGCTCAT 333061 Query 111822 TTT 111824 || Sbjct 333060 GTT 333058 >seq46 Length=2947087 Score = 86.0 bits (94), Expect = 2e-11 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 111691 ATCTTATGTGCCAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGAT 111750 || |||| | ||||| |||||| | | ||| | || || |||||||||||||||| Sbjct 704914 ATTTTATTTTGCAGTTCTATGTAGCCAATGGGGAATTGTCCTGTCAAATGTATCAGCGAT 704973 Query 111751 CTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCT 111810 ||||||| || || || ||||| || || || |||||| ||| || || ||||| ||| Sbjct 704974 CTGCTGACATGGGCCTGGGTGTGCCATTCAACATTGCATCTTATGCCCTCCTTACATGCA 705033 Query 111811 TAATCGCTCA 111820 | || ||||| Sbjct 705034 TGATTGCTCA 705043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303229157427464