Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq765 95.1 1e-14 seq629 95.1 1e-14 seq1759 91.5 1e-13 seq558 91.5 1e-13 seq166 87.8 2e-12 seq616 86.0 5e-12 seq154 86.0 5e-12 >seq765 Length=559349 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || ||||| |||| || |||| |||||| || | Sbjct 186285 ATGCAGATCTTCGTTAAGACCCTCACCGGAAAGACGATAACTCTCGAGGTCGAGAGCAGC 186344 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | |||||| || || ||||||||||| || ||||| || || Sbjct 186345 GACACCATCGATAACGTCAAAGCCAAAATCCAGGACAAAGAAGGAATCCCTCCTGACCAG 186404 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||| ||||| || || |||| | | | | | |||||| ||| Sbjct 186405 CAGCGTCTCATCTTCGCCGGAAAGCAGCTTGAGGATGGCCGTACCCTGGCCGATTACAAC 186464 Query 24171 ATTCAAAAAGAATCTAC 24187 || ||||| || || || Sbjct 186465 ATCCAAAAGGAGTCAAC 186481 >seq629 Length=730630 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| || || || || | ||||| ||||||||||| || | Sbjct 101975 ATGCAGATCTTCGTGAAAACCTTGACCGGCAAGACTATTACTCTCGAAGTCGAGAGCAGC 102034 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| |||||| || || ||||| || ||||| || || Sbjct 102035 GACACCATCGACAATGTCAAGGCTAAGATTCAGGATAAGGAAGGAATTCCTCCAGACCAG 102094 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || || || | | || ||||| ||||| || | | | | | ||||||||| Sbjct 102095 CAAAGGCTCATCTTTGCTGGGAAGCAGCTCGAGGACGGTCGCACCTTGGCCGATTATAAT 102154 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||||| || || ||||| ||||| | ||| Sbjct 102155 ATTCAGAAGGAGTCTACCCTTCATCTTGTG 102184 >seq1759 Length=69365 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || | || ||| | ||||| ||| | | Sbjct 30693 ATGCAGATCTTCGTCAAGACTCTTACCGGCAAGACCATAACCCTGGAAGTGGAGAGCTCC 30634 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | |||||| ||||| ||||| |||||||| ||||| || || Sbjct 30633 GACACCATCGACAATGTCAAAGCTAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCAG 30574 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | |||| | || || |||||||| || |||| ||| | | | |||||||| Sbjct 30573 CAACGCTTGATCTTCGCTGGAAAGCAACTGGAGGATGGCAGGACCCTTGCTGATTATAAT 30514 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 || || || ||||| || | ||| | || | ||||||| |||||| Sbjct 30513 ATACAGAAGGAATCCACCTTGCATCTCGTTCTCCGATTGAGGGGAGGA 30466 >seq558 Length=819058 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| |||| || || |||| ||| | || || ||| || Sbjct 126885 ATGCAGATCTTTGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTTGAGTCCTCG 126944 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| || || || ||||||||||| Sbjct 126945 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCCGATCAG 127004 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | || ||| |||||||| || |||| | | | || || || ||| Sbjct 127005 CAGCGGCTGATCTTCGCCGGGAAGCAACTGGAGGATGGCCGTACTCTCGCTGACTACAAC 127064 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || || || || || || |||| Sbjct 127065 ATCCAGAAGGAGTCCACTCTTCA 127087 >seq166 Length=1910501 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || ||||||||||| | || ||| | || || ||| | Sbjct 30152 ATGCAGATTTTTGTCAAGACCCTAACTGGAAAAACCATAACCTTGGAGGTTGAGAGCTCA 30211 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | ||||| ||||| || || || ||||| ||||| || || Sbjct 30212 GATACTATTGACAATGTCAAGGCTAAGATCCAAGAGAAGGAGGGCATTCCTCCAGACCAG 30271 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| |||||| | ||||||||||| || |||| || ||| | || ||||| || Sbjct 30272 CAGAGGTTGATTTTTGCTGGCAAGCAACTTGAGGATGGGAG-AACATTGGCTGATTACAA 30330 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||| || |||||||| |||| || || Sbjct 30331 TATTCAGAAGGAATCTACCCTTCACTTGGT 30360 >seq616 Length=741428 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || |||| ||||| | || ||| | || || ||| | Sbjct 398504 ATGCAGATCTTCGTCAAGACTCTAACCGGAAAGACTATAACCCTGGAGGTTGAGAGCTCT 398445 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || |||||| ||||| |||||||| ||||| || || Sbjct 398444 GACACCATCGACAACGTTAAGGCCAAGATTCAGGACAAGGAAGGCATCCCTCCTGACCAG 398385 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | |||| | || ||| ||||| || || |||| | | | || |||||||| Sbjct 398384 CAGCGCTTGATCTTCGCCGGAAAGCAGCTGGAGGATGGTCGGACCCTCGCTGATTATAAT 398325 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || ||||| || | ||| | || | ||||||| ||||| Sbjct 398324 ATACAGAAGGAATCCACCTTGCATCTCGTTCTCCGATTGAGGGGAGG 398278 >seq154 Length=1955999 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || |||| ||||| | || ||| | || || ||| | Sbjct 1202948 ATGCAGATCTTCGTCAAGACTCTAACCGGAAAGACTATAACCCTGGAGGTTGAGAGCTCT 1202889 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || |||||| ||||| |||||||| ||||| || || Sbjct 1202888 GACACCATCGACAACGTTAAGGCCAAGATTCAGGACAAGGAAGGCATCCCTCCTGACCAG 1202829 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | |||| | || ||| ||||| || || |||| | | | || |||||||| Sbjct 1202828 CAGCGCTTGATCTTCGCCGGAAAGCAGCTGGAGGATGGTCGGACCCTCGCTGATTATAAT 1202769 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || ||||| || | ||| | || | ||||||| ||||| Sbjct 1202768 ATACAGAAGGAATCCACCTTGCATCTCGTTCTCCGATTGAGGGGAGG 1202722 Score = 82.4 bits (90), Expect = 7e-11 Identities = 153/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || |||| ||||| | || ||| | || || ||| | Sbjct 1196050 ATGCAGATCTTCGTCAAGACTCTAACCGGAAAGACTATAACCCTGGAGGTTGAGAGCTCT 1195991 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || |||||| ||||| |||||||| ||||| || || Sbjct 1195990 GACACCATCGACAACGTTAAGGCCAAGATTCAGGACAAGGAAGGCATCCCTCCTGACCAG 1195931 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | |||| | || ||| ||||| || || |||| | | | || |||||||| Sbjct 1195930 CAGCGCTTGATCTTCGCCGGAAAGCAGCTGGAGGATGGTCGGACCCTCGCTGATTATAAT 1195871 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGA 24215 || || || ||||| || | ||| | || | ||||||| ||| Sbjct 1195870 ATACAGAAGGAATCCACCTTGCATCTCGTTCTCCGATTGAGGGGA 1195826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429896952675060