Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq166 95.1 1e-14 seq68 93.3 3e-14 seq765 91.5 1e-13 seq56 91.5 1e-13 seq687 87.8 1e-12 seq629 87.8 1e-12 seq558 84.2 2e-11 seq61 84.2 2e-11 >seq166 Length=1910501 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| || || || || ||||| || || ||||| || |||| ||| | | || Sbjct 30364 CAGAACCAAGTGAAGGGTAGATTCCTTCTGAATATTGTAATCAGCCAATGTTCTCCCATC 30305 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 ||| | ||| ||||| ||| |||| | || ||| ||||| ||| | |||||| || || Sbjct 30304 CTCAAGTTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGAGGAATGCCCTCCTTCTC 30245 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || ||| || | | | | ||| || | ||| |||| ||| ||| Sbjct 30244 TTGGATCTTAGC--CTTGACATTGTCAATAGTATCTGAGCTCTCAACCTCCAAGGTTATG 30187 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||||||| || || || ||||||||||||||||| Sbjct 30186 GTTTTTCCAGTTAGGGTCTTGACAAAAATCTGCAT 30152 >seq68 Length=2695109 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | ||||||| || || |||||||||||||| |||||||||||||| Sbjct 1665293 CCACCTCGGAGTCGAAGTACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGCA 1665352 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||| | || || || ||| | ||||||| ||| || || || Sbjct 1665353 AGCGTGCGCCCATCCTCAAGCTGCTTCCCAGCAAAGATAAGCCTCTGCTGATCTGGGGGA 1665412 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| || || || ||| || | | | ||||| | ||| Sbjct 1665413 ATGCCCTCCTTGTCCTGGATCTTGGC--CTTAACATTATCAATGGTGTCAGAGCTCTCAA 1665470 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| ||| ||||| ||||| |||| || || ||||| |||||||| Sbjct 1665471 CTTCCAAGGTTATGGTCTTTCCAGTCAAAGTCTTCACAAAGATCTGCAT 1665519 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| || | ||||| ||||||||||| || |||||||| || || Sbjct 1665065 CCACCACGGAGGCGCAGGACAAGGTGCAGAGTGGACTCCTTCTGAATGTTGTAATCTGCA 1665124 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||| | || || || ||| | ||||||| ||| ||||| || Sbjct 1665125 AGGGTACGTCCATCCTCAAGCTGCTTCCCAGCAAAGATAAGCCTCTGCTGGTCAGGTGGG 1665184 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||| ||||| |||| ||| || | | | ||||| |||| Sbjct 1665185 ATGCCCTCCTTGTCCTGGATTTTGGCCTTGACATTATCAATGGTGTCAGAACTCTCCACC 1665244 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| ||||||||| ||||| |||| || || |||||||| |||||| Sbjct 1665245 TCCAAGGTGATGGTCTTTCCAGTCAAAGTCTTCACAAAAATTTGCATT 1665292 >seq765 Length=559349 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 |||||| || ||||| || || | || || ||||| ||||| || |||||||| || || Sbjct 186968 CCCTCCACGAAGCCTGAGCACAAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAATCAGC 186909 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || || | | || |||| ||||| || || | || |||| ||| ||||| || Sbjct 186908 CAAAGTCCGGCCATCTTCCAGCTGTTTCCCAGCGAAGATCAGCCTCTGCTGGTCTGGTGG 186849 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||||| ||||| |||| ||| || | | | |||||||| | |||| Sbjct 186848 GATACCCTCCTTGTCCTGTATTTTTGCCTTGACATTATCAATAGTGTCGCTGCTCTCCAC 186789 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||| || |||||||| |||| || || || ||||||||||| Sbjct 186788 CTCGAGGGTAATAGTTTTTCCAGTCAAGGTCTTAACGAAAATCTGCAT 186741 >seq56 Length=2885905 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || |||||||| || || ||||||||||| | ||| | |||| |||| ||| Sbjct 2370373 TGGAGAGTCGACTCCTTCTGAATATTGTAGTCGGCAAGGGTCCTTCCGTCTTCCAGTTGC 2370314 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || || || | || || ||||| |||||| || | |||||| ||||| || || Sbjct 2370313 TTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCTTGGATCTTG 2370254 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || |||||| | | | | |||||| || ||| || | || ||||| || || | Sbjct 2370253 GC--CTTCACATTGTCGATAGTGTCCGAGGACTCTACCTCGAGAGTTATGGTCTTGCCCG 2370196 Query 16911 TCAGCGTTTTGACAAAAATCTGCATTTT 16938 | || |||||||| || |||||||| || Sbjct 2370195 TTAGGGTTTTGACGAAGATCTGCATCTT 2370168 >seq687 Length=650195 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 ||||||| ||| || ||||||||||| || ||||||||||| |||| ||| | | || Sbjct 286760 AGTACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCCAGGGTGCGGCCATCT 286701 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || || || ||| | || |||| ||| ||||| || | ||||||||||| Sbjct 286700 TCTAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCAGGTGGAATTCCCTCTTTGTCC 286641 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | | ||||| | ||| || | |||||| | Sbjct 286640 TGGATCTTAGC--CTTAACATTGTCAATGGTGTCTGAGCTTTCCACCTCGAGGGTGATTG 286583 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | ||||| || || ||||| || || |||||||| Sbjct 286582 TCTTTCCAGTAAGGGTTTTCACGAAGATCTGCAT 286549 >seq629 Length=730630 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| || | || || || || || || || ||||| || || ||| Sbjct 102657 CCACCACGCAGGCGCAGGACAAGGTGAAGGGTCGATTCTTTCTGGATGTTATAATCAGCC 102598 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||||||| || || || ||| | || |||| ||| || ||| ||| Sbjct 102597 AGAGTCCTTCCGTCCTCCAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGATCCGGAGGA 102538 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| || || || | | |||||| | | | |||||||| | |||| Sbjct 102537 ATACCCTCCTTATCCTGGATCTTCGCCTTCACATTATCAATAGTGTCGCTGCTCTCCACC 102478 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| |||||||| || || |||| || ||||| |||||||||||| Sbjct 102477 TCCAAAGTGATGGTCTTCCCAGTCAAGGTCTTGACGAAAATCTGCATT 102430 >seq558 Length=819058 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 ||||||| || || ||||||||||| || ||||||||||| || | || | | ||| Sbjct 127096 AGTACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGAGTACGGCCATCC 127037 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| ||| || || || | || |||||||| || || ||| | ||||| ||||| Sbjct 127036 TCCAGTTGCTTCCCGGCGAAGATCAGCCGCTGCTGATCGGGAGGGATTCCCTCCTTGTCC 126977 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | | ||||| || ||| || | ||| || | Sbjct 126976 TGGATCTTGGC--CTTGACATTGTCGATGGTGTCCGAGGACTCAACCTCTAGGGTTATCG 126919 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || || || ||||| ||||| |||||||| Sbjct 126918 TCTTCCCCGTTAGGGTTTTCACAAAGATCTGCAT 126885 >seq61 Length=2804743 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/217 (70%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||||| ||||||||||| || || |||| || |||| |||| | || Sbjct 1593324 AGGACAAGATGCAAAGTGGACTCCTTCTGAATATTGTTATCTGCCAGGGTTCGTCCATCT 1593265 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| || || || ||| | || | || ||||||||| ||| | ||||| ||||| Sbjct 1593264 TCCAGCTGCTTCCCAGCAAAGATCAACCTCTGTTGGTCTGGAGGGATTCCCTCCTTGTCC 1593205 Query 16844 GCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGC--TCCGTTTCCACGGTGAT 16899 || ||||| ||| || | | | ||| ||| || ||| |||| || || Sbjct 1593204 TGAATCTTTGC--CTTAACATTATCAATGATGT--CCGAGCTTTCCACCTCCAAAGTAAT 1593149 Query 16900 GGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||| ||||| ||||| || |||||||||||||||||| Sbjct 1593148 GGTCTTTCCTGTCAGTGTCTTGACAAAAATCTGCATT 1593112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405051209401480