Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1752 241 2e-58 seq79 111 2e-19 seq755 100 4e-16 seq320 87.8 2e-12 >seq1752 Length=70440 Score = 241 bits (266), Expect = 2e-58 Identities = 425/612 (69%), Gaps = 8/612 (1%) Strand=Plus/Plus Query 32657 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 32716 |||||| ||||| || ||||| | ||||| |||| || || ||||| || || || Sbjct 24528 CAAACACGCGAAGTCACAGTGCAAGCCCTCATCTCGCGAGATCAACTCGTTTGAGAATGT 24587 Query 32717 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATG-ATCCAGAAA 32775 | ||| ||||| | ||||||||| || ||||||||||| | |||||| | |||||||| Sbjct 24588 TAATCCCGGCATCAAGCCACGCTTCTTTAGCCAAAATATCG-CGCAAAAGCTTCCAGAAA 24646 Query 32776 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG--TC 32833 | || ||||| || || ||||| || || || ||||| || || | | | | | Sbjct 24647 AAAATATTCCCTCCACACAGGCAAAAGCGATCAGCCTCTCCGCAAAA--GTCTCCGAACC 24704 Query 32834 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 32893 || |||||| | | ||||| || || || || |||||||| | ||||| || || Sbjct 24705 ATCGATCCACCTGAGGGCCCACTCAGCTTTTTTAGCCACACAAGGGACAGTCTCAATTGC 24764 Query 32894 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 32953 || ||| | || || || || |||||||| ||| || || | ||||||||| || Sbjct 24765 ATGAAACAAGCGATTCTTCTCGTTGGAATCTTTAATATAAGTCTCCAACAAAAGACTGTA 24824 Query 32954 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAG-AAGCATCTAGCCTCGG 33012 ||| || ||||| || |||||||| || ||||| ||||| ||| ||||| | |||||| | Sbjct 24825 CATCTCGGAATGGATATTTTCAATAGCGATTTGGAATCCATAGAAAGCA-CGAGCCTCAG 24883 Query 33013 TAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 33072 || ||| ||||| | ||| ||| | || | ||||| || || || || || Sbjct 24884 CAACCTGGACTTCCTTCATAAAACGTCCAGCGAGGTTTTCGAGAACGATACCATCGGAGG 24943 Query 33073 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC 33132 | ||||| || || | ||||| | | ||| | ||||| || |||||||| | || Sbjct 24944 CGGCAAAGAATGCAAGAACATGGGTGACAAAGTGCTTTTCATCGGGTGTTAGGGCTTCCC 25003 Query 33133 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33192 | | || ||||| ||| | ||| || || || | |||||||| || ||||| || | Sbjct 25004 AGTGGCGGAGATCTTGAGAGAGATCGACCTCCTCAGCAGTCCAAAAGGAGGCCTCGGCTT 25063 Query 33193 TTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGAT 33252 | |||||||| | |||||| | | |||| |||||| || ||| || | || || | Sbjct 25064 TCTTATACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAAACGATCTGAGT 25123 Query 33253 TTTTTGCAAGGA 33264 || ||||||| Sbjct 25124 TTGGGGCAAGGA 25135 >seq79 Length=2571107 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 ||||| ||||| || | ||| ||||||||||| || |||||| | ||| | | || Sbjct 116813 GTTCCAGCATTGAAAAGGGTGGGAGAAGCGTGTGTGAACCATCGCTGAGACATCAAATGA 116872 Query 63527 TACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAA 63585 || || |||||| | || || ||||| | ||| |||||||| || || || | ||||| Sbjct 116873 TAGGTTTCAATAACCGAATCAATATCATCCTTG-TGAATTCCAACAGCAACCCTCATTAG 116931 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 ||||||||||||||| || || | ||| | | ||| || | |||||| |||||| Sbjct 116932 CATGTGCTGAGGTCTCTCCACAACCTTCCCTTGAACTTTTAAGAGGTAGGACCTTTCCAG 116991 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 || ||||| ||||| || | || ||||| || || ||||| || Sbjct 116992 GGTCTTAAAGCCAAAGTAATCATAGTTGAAGTCCCGATCATAAATGAT 117039 Score = 95.1 bits (104), Expect = 2e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 |||||| ||||| | || | || || | ||| | || | ||||| |||| |||||| Sbjct 116399 TCCTCCTTGATCAACATAACGGGCAGTATCATTGAACACCCGTAACATGGGAACAATACC 116458 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 ||| ||||| ||||| || || ||||||| ||| | ||||||||||| ||| || Sbjct 116459 ATTAGATGTCCCATTTGTTCCACGAATATAGCCGCCAGTAGCACGAATATTGTGAATAGA 116518 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | || ||||| || || ||| ||| | || || || || |||||||| || Sbjct 116519 GACGCCAATTCCTCCAGCAGATTTGCTGATAACAGCACACTCCTTCAAAGTATCATATAT 116578 Query 63406 GCCCTCTATACTATCATCCATCATG 63430 ||| || ||||||||||| ||||| Sbjct 116579 GCCTTCAATACTATCATCTTTCATG 116603 >seq755 Length=570705 Score = 100 bits (110), Expect = 4e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 |||||| ||||| | || | || || | ||| | || | ||||| |||| ||| || Sbjct 116405 TCCTCCTTGATCAACATACCGTGCAGTATCATTGAACACACGTAACATGGGAACAATGCC 116464 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 ||| ||||| ||||| || || ||||| || ||| | ||||||||||| || || Sbjct 116465 ATTAGATGTCCCATTTGTTCCACGAATATAACTACCAGTAGCACGAATATTGTGAACGGA 116524 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | ||| ||||| ||||| |||| ||| | || || || || |||||||| || Sbjct 116525 GACACCAATTCCTCCTGCAGATTTACTGATAACAGCACACTCCTTCAAAGTATCATATAT 116584 Query 63406 GCCCTCTATACTATCATCCATCATG 63430 ||| || ||||||||||| ||||| Sbjct 116585 GCCTTCAATACTATCATCTTTCATG 116609 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 ||||| |||||||| | ||| || || || ||||| |||||| || ||| | | || | Sbjct 116815 GTTCCAGCATTAAAAAGGGTGGGCGATGCATGAGTGAACCATCGTTGAGACATCAAATGG 116874 Query 63527 TACGTCTCAATAGCTGAGTCTATATC--CCATTGATGAATTCCTACTGCGACACGCATTA 63584 || || | ||| | || || ||||| |||| |||||||| || || || | ||| | Sbjct 116875 TAGGTTTTGATAACAGAATCAATATCATCCATG--TGAATTCCAACAGCAACTCTCATCA 116932 Query 63585 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63644 ||||||||||||||| || || | ||| | | ||| || | ||||| ||||| Sbjct 116933 GCATGTGCTGAGGTCTCTCTACTACCTTCCCTTGCACTTTTAAGAGATAGGACCGTTCCA 116992 Query 63645 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 | || || || ||||| || | || |||||| || || ||||| || Sbjct 116993 AGGTCTTGAAGCCAAAGTAATCATAGTCAAAGTCCCGATCATAAATGAT 117041 >seq320 Length=1281786 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 ||| || ||||| ||| | || |||| |||| | ||||| | ||| |||||||| || Sbjct 81808 TCCACCTTGATCAGCGTAGCGCGCAGTGTCATTAAACACTCTAAGCATAGGAATAATGCC 81867 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 |||||| | ||||| |||| || || || || |||||||||||| | || Sbjct 81868 ATTGGAACTCCCATTTATCCCACGAATGTAACTGCCTGCAGCACGAATATTATGCACAGA 81927 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 ||||| ||||| || || | || || | || || || || |||||| | || Sbjct 81928 AAGACCAATTCCTCCAGCTAGCTTGCTAATAACAGCACACTCCTTCAAAGTATCAAATAT 81987 Query 63406 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448 |||||| || |||||||| ||||| | ||||| |||||| Sbjct 81988 GCCCTCAATGCTATCATCTTTCATGCACACAAGAAAGCAGCTA 82030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633572977179200