Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1752 221 1e-52 seq1904 91.5 2e-13 seq563 91.5 2e-13 seq276 91.5 2e-13 seq1113 87.8 2e-12 seq1121 86.0 7e-12 seq552 86.0 7e-12 seq1831 84.2 2e-11 seq434 84.2 2e-11 seq233 84.2 2e-11 seq29 84.2 2e-11 seq801 82.4 9e-11 seq121 82.4 9e-11 >seq1752 Length=70440 Score = 221 bits (244), Expect = 1e-52 Identities = 411/595 (69%), Gaps = 9/595 (2%) Strand=Plus/Plus Query 93089 AAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTT 93148 || ||||| ||||| || || || || ||||| || |||||||| || ||||||| Sbjct 24529 AAACACGCGAAGTCACAGTGCAAGCCCTCATCTCGCGAGATCAACTCGTTTGAGAATGTT 24588 Query 93149 AAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAA-CTACCAGaaaa 93207 || || || | || || || ||||| ||||||||||| | |||||| || |||||||| Sbjct 24589 AATCCCGGCATCAAGCCACGCTTCTTTAGCCAAAATATCGC-GCAAAAGCTTCCAGAAAA 24647 Query 93208 aaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACT 93267 |||||| || ||||| ||||| || | | | || |||||| | | ||| | Sbjct 24648 AAATATTCCCTCCACACAGGCAAAAGCGATCAGCCTCTCCGCAAAAGTCTCCGAACCATC 24707 Query 93268 GCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGC 93327 | ||||| | | ||||| || |||||||| | |||||| | || || || || Sbjct 24708 G---ATCCACCTGAGGGCCCACTCAGCTTTTTTAGCCACACAAGGGACAGTCTCAATTGC 24764 Query 93328 GTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATA 93387 | ||| | | || ||||| |||||| || || || || | || ||| || Sbjct 24765 ATGAAACAAGCGATTCTTCTCGTTGGAATCTTTAATATAAGTCTCCAACAAAAGACTGTA 24824 Query 93388 CATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGT 93447 ||| || ||||||| ||| || || || ||||||||||| |||||| | ||| || | Sbjct 24825 CATCTCGGAATGGATATTTTCAATAGCGATTTGGAATCCATAGAAAGCACGAGCCTCAGC 24884 Query 93448 GATCTGCACTT-CTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATG 93506 | ||| |||| ||| | |||| || | |||| ||||| || ||||||||||| | Sbjct 24885 AACCTGGACTTCCTTCATAAAACGTC-CAGCGAGGTTTTCGAGAACGATACCATCGGAGG 24943 Query 93507 CTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCC 93566 | ||||| || || | | ||| | | ||| || || ||||| | | || |||| Sbjct 24944 CGGCAAAGAATGCAAGAACATGGGTGACAAAGTGCTTTTCATCGGGTGTTAGGGCTTCCC 25003 Query 93567 AATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTT 93626 | | | ||||||| || |||||||| || || |||||||||| || || || |||| Sbjct 25004 AGTGGCGGAGATCTTGAGAGAGATCGACCTCCTCAGCAGTCCAAAAGGAGGCCTCGGCTT 25063 Query 93627 TTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACA-AAACGAT 93680 | || ||||| ||||| || | | | |||| |||||| || || ||| ||||||| Sbjct 25064 TCTTATACATTTCCCAGATTTGTGGGTATTCAATTGGGAACAT-ACAGAAACGAT 25117 >seq1904 Length=57016 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/97 (81%), Gaps = 6/97 (6%) Strand=Plus/Plus Query 126258 TATTTACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCG 126317 ||| | |||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| Sbjct 43199 TATGTTCAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCG 43256 Query 126318 GGA----GCGTGGGTTCGAACCCCACACCTGACAAAT 126350 || |||||||||| || ||||| |||||| || Sbjct 43257 TGAGAGGGCGTGGGTTCAAATCCCACTTCTGACATAT 43293 >seq563 Length=808264 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/97 (81%), Gaps = 6/97 (6%) Strand=Plus/Plus Query 126262 TACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA- 126320 || ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 413859 TAAAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAG 413916 Query 126321 ---GCGTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||||| || ||||| ||||||| || || Sbjct 413917 AGGGCGTGGGTTCAAATCCCACTTCTGACAATTTTTT 413953 >seq276 Length=1394198 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/97 (81%), Gaps = 6/97 (6%) Strand=Plus/Minus Query 126258 TATTTACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCG 126317 ||| | |||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| Sbjct 499057 TATGTTCAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCG 499000 Query 126318 GGA----GCGTGGGTTCGAACCCCACACCTGACAAAT 126350 || |||||||||| || ||||| |||||| || Sbjct 498999 TGAGAGGGCGTGGGTTCAAATCCCACTTCTGACATAT 498963 >seq1113 Length=268884 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/90 (82%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 175142 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGGAAGGGCGTGGG 175199 Query 126328 TTCGAACCCCACACCTGACAAATTATTATT 126357 ||| || |||||| ||| |||||| || || Sbjct 175200 TTCAAATCCCACAGCTGTCAAATTTTTTTT 175229 >seq1121 Length=265264 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/87 (83%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 201988 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 201931 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 201930 GCGTGGGTTCAAATCCCACTTCTGACA 201904 >seq552 Length=833122 Score = 86.0 bits (94), Expect = 7e-12 Identities = 74/89 (83%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTC-CCTC-GGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | | || | | || Sbjct 580278 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTCAGAGGGC 580337 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATT 126351 |||||||| || ||||| ||||||| || Sbjct 580338 GTGGGTTCAAATCCCACTTCTGACAATTT 580366 >seq1831 Length=63321 Score = 84.2 bits (92), Expect = 2e-11 Identities = 71/86 (83%), Gaps = 6/86 (7%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 40489 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 40546 Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||| || ||||| |||||| Sbjct 40547 CGTGGGTTCAAATCCCACTTCTGACA 40572 >seq434 Length=1032529 Score = 84.2 bits (92), Expect = 2e-11 Identities = 74/91 (81%), Gaps = 6/91 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 827815 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGG 827872 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATT 126351 |||||||||| || ||||| ||||||| || Sbjct 827873 GCGTGGGTTCAAATCCCACTTCTGACAACTT 827903 >seq233 Length=1527260 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/88 (82%), Gaps = 6/88 (7%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGG 126319 |||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 1093405 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAG 1093462 Query 126320 AGCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 1093463 GGCGTGGGTTCAAATCCCACTTCTGACA 1093490 >seq29 Length=3434610 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/88 (82%), Gaps = 6/88 (7%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA--- 126320 |||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 1076355 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAG 1076298 Query 126321 -GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 1076297 GGCGTGGGTTCAAATCCCACTTCTGACA 1076270 >seq801 Length=520247 Score = 82.4 bits (90), Expect = 9e-11 Identities = 76/94 (81%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 148701 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 148758 Query 126325 GGGTTCGAACCCCACACCTGACAA-ATTATTATT 126357 |||||| || |||||| ||| ||| || ||| || Sbjct 148759 GGGTTCAAATCCCACAGCTGTCAAGATGATTTTT 148792 >seq121 Length=2131664 Score = 82.4 bits (90), Expect = 9e-11 Identities = 68/82 (83%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 112886 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 112943 Query 126328 TTCGAACCCCACACCTGACAAA 126349 ||| || |||||| ||| |||| Sbjct 112944 TTCAAATCCCACAGCTGTCAAA 112965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556808928416480