Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq765 95.1 1e-14 seq166 82.4 6e-11 >seq765 Length=559349 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || ||||||||||| ||||||| || || ||||| |||| || |||| Sbjct 186513 ATGCAGATCTTTGTCAAAACCTTGACCGGAAAGACTATTACTCTGGAGGTCGAGAGCAGC 186572 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | || || || ||| || || ||||| ||||| || || Sbjct 186573 GACACCATTGATAACGTTAAGGCTAAGATTCAGGATAAGGAAGGGATTCCCCCAGACCAG 186632 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 |||||||| || | ||| || ||||| | || || | ||| |||||||||||||| Sbjct 186633 CAAAGGCTCATCTTTGCTGGAAAACAGCTCGAGGACGGTCGCACTTTGGCCGATTATAAT 186692 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || |||||||| || || | ||| | |||||||| || || Sbjct 186693 ATTCAGAAGGAATCTACCCTTCACCTCGTGCTCCGTCTGCGTGGAGG 186739 >seq166 Length=1910501 Score = 82.4 bits (90), Expect = 6e-11 Identities = 150/220 (68%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| ||||||||||| || | || || |||||||| ||| |||| || | Sbjct 30152 ATGCAGATTTTTGTCAAGACCCTAACTGGAAAAACCATAACCTTGGAGGTTGAGAGCTCA 30211 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || ||| | | || || || || || || || ||| |||| || || Sbjct 30212 GATACTATTGACAATGTCAAGGCTAAGATCCAAGAGAAGGAGGGCATTCCTCCAGACCAG 30271 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || ||| | |||| ||| ||||| ||| | || ||| | ||| |||| ||||| ||| Sbjct 30272 CAGAGGTTGATTTTTGCTGGCAAGCAACTTGAGGATGGGAGAACATTGGCTGATTACAAT 30331 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGC 111406 || || || |||||||| || || || || ||||||||| Sbjct 30332 ATTCAGAAGGAATCTACCCTTCACTTGGTTCTGCGTCTGC 30371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423001578978400