Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq866 140 7e-28 seq178 123 5e-23 seq114 123 5e-23 seq3263 93.3 9e-14 seq1276 93.3 9e-14 seq1030 93.3 9e-14 seq687 93.3 9e-14 seq649 93.3 9e-14 seq370 93.3 9e-14 seq132 91.5 3e-13 seq6 91.5 3e-13 seq766 89.7 1e-12 seq908 87.8 4e-12 seq214 86.0 1e-11 seq180 86.0 1e-11 >seq866 Length=447837 Score = 140 bits (154), Expect = 7e-28 Identities = 206/292 (71%), Gaps = 0/292 (0%) Strand=Plus/Minus Query 218517 TGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCC 218576 ||||||||| |||||||||| ||| | || || | |||||| | | |||||||| Sbjct 351507 TGACTTCATTAACAAGGAGCTTATTTTGTTTTCCATGGCTGATGTTCAAAGATCTATTCC 351448 Query 218577 CAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCG 218636 | | || | |||||||| |||||| | ||| | |||||||| || |||||| | Sbjct 351447 CTCCATGATTGATGGCCTGAAGCCAGCTCAGAGGAAGATCCTTTTCAGTTGTTTCAAGAG 351388 Query 218637 GAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGG 218696 || ||||| |||| ||||| || | |||||| ||||||||||| || | |||| Sbjct 351387 AAATTTGGTTAAAGACATTAAAGTTTCCCAGTTTCAAGGTTATGTATCTGAGAAGTCTGC 351328 Query 218697 CTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGT 218756 ||||| || ||||| || ||||| | | | | || | || ||||||||| | | | | Sbjct 351327 TTACCACCATGGTGATCAAAGTCTTAATGCTACAATCATTGGAATGGCACAGAATTTTAT 351268 Query 218757 GGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGT 218808 |||||||| ||||| ||| | || || || || || ||||| ||||| Sbjct 351267 TGGCAGTAATAACATCAACCTTCTTGCACCAAAAGGACAATTTGGCACTCGT 351216 >seq178 Length=1827475 Score = 123 bits (136), Expect = 5e-23 Identities = 204/292 (70%), Gaps = 2/292 (1%) Strand=Plus/Minus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCC 218577 |||||||| |||||||||| ||| | || || | |||||| | | |||||||| Sbjct 538112 GACTTCATTAACAAGGAGCTTATTTTGTTTTCTGTGGCTGATGTCCAAAGATCTATTCCA 538053 Query 218578 AGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGG 218637 || | ||||| || |||||| | || | |||||||| || |||||| || Sbjct 538052 TCTATGATTGATGGTCTGAAGCCAGCTCAAAGGAAGATCCTTTTCAGTTGTTTCAAGAGG 537993 Query 218638 AACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGC 218697 || |||| |||| || || || | |||||| |||||||||||||| | ||| Sbjct 537992 AATTTGGTCAAAGACATAAAAGTTTCCCAGTTTCAAGGTTATGTATCCGAGAAGGCTGCT 537933 Query 218698 TACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTG 218757 ||||| || ||||| || ||||| | ||| | || | |||||||||||| | | | | Sbjct 537932 TACCACCATGGTGATCAAAGTCTTAATGGTACAATCATTGGCATGGCACAGAATTTTATT 537873 Query 218758 GGCAGTAACAACATGAA-CTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGT 218808 |||||||| ||||| || ||| ||| || || || || ||||| ||||| Sbjct 537872 GGCAGTAATAACATCAATCTTCTTGC-ACCAAAAGGACAATTTGGCACTCGT 537822 >seq114 Length=2223408 Score = 123 bits (136), Expect = 5e-23 Identities = 202/291 (69%), Gaps = 0/291 (0%) Strand=Plus/Minus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCC 218577 |||||||| |||||||||| ||| | || || | |||||| | | |||||||| Sbjct 1040923 GACTTCATTAACAAGGAGCTTATTTTGTTTTCTGTGGCTGATGTCCAAAGATCTATTCCA 1040864 Query 218578 AGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGG 218637 || | ||||| || |||||| | || | |||||||| || |||||| || Sbjct 1040863 TCTATGATTGATGGTCTGAAGCCAGCTCAAAGGAAGATCCTTTTCAGTTGTTTCAAGAGG 1040804 Query 218638 AACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGC 218697 || |||| |||| || || || | |||||| |||||||||||||| | ||| Sbjct 1040803 AATTTGGTCAAAGACATAAAAGTTTCCCAGTTTCAAGGTTATGTATCCGAGAAGGCTGCT 1040744 Query 218698 TACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTG 218757 ||||| || ||||| || ||||| | ||| | || | |||||||||||| | | | | Sbjct 1040743 TACCACCATGGTGATCAAAGTCTTAATGGTACAATCATTGGCATGGCACAGAATTTTATT 1040684 Query 218758 GGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGT 218808 |||||||| ||||| ||| | || || || || || ||||| ||||| Sbjct 1040683 GGCAGTAATAACATCAACCTTCTTGCACCAAAAGGGCAATTTGGCACTCGT 1040633 >seq3263 Length=15895 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 8577 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 8636 Query 142563 CCCCAC 142568 |||||| Sbjct 8637 CCCCAC 8642 >seq1276 Length=180580 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 160888 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 160947 Query 142563 CCCCAC 142568 |||||| Sbjct 160948 CCCCAC 160953 >seq1030 Length=313933 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 197024 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 197083 Query 142563 CCCCAC 142568 |||||| Sbjct 197084 CCCCAC 197089 >seq687 Length=650195 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 248480 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 248421 Query 142563 CCCCAC 142568 |||||| Sbjct 248420 CCCCAC 248415 >seq649 Length=700563 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 489797 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 489856 Query 142563 CCCCAC 142568 |||||| Sbjct 489857 CCCCAC 489862 >seq370 Length=1163173 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 967636 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 967577 Query 142563 CCCCAC 142568 |||||| Sbjct 967576 CCCCAC 967571 >seq132 Length=2062632 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 438425 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 438484 Query 142564 CCCAC 142568 ||||| Sbjct 438485 CCCAC 438489 >seq6 Length=4471405 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 4433076 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4433135 Query 142564 CCCAC 142568 ||||| Sbjct 4433136 CCCAC 4433140 >seq766 Length=558893 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||| Sbjct 380878 TAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 380937 Query 142562 GCCCCAC 142568 ||||||| Sbjct 380938 GCCCCAC 380944 >seq908 Length=420522 Score = 87.8 bits (96), Expect = 4e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCAC 142568 |||||||||||||||||||| || ||||||| || ||||||||||||||||||||||| Sbjct 302479 TAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 302536 >seq214 Length=1602240 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 489603 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 489544 Query 142564 CCCAC 142568 ||||| Sbjct 489543 CCCAC 489539 >seq180 Length=1810540 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 1515891 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1515832 Query 142564 CCCAC 142568 ||||| Sbjct 1515831 CCCAC 1515827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027738663427132