Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq166 102 6e-17 seq765 95.1 9e-15 seq629 95.1 9e-15 seq61 95.1 9e-15 seq403 93.3 3e-14 seq687 84.2 2e-11 seq887 82.4 5e-11 >seq166 Length=1910501 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || |||| || |||||||| ||| |||| || | || Sbjct 30152 ATGCAGATTTTTGTCAAGACCCTAACTGGAAAAACCATAACCTTGGAGGTTGAGAGCTCA 30211 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| || || || || ||||| | ||| | |||| Sbjct 30212 GATACTATTGACAATGTCAAGGCTAAGATCCAAGAGAAGGAGGGCATTCCTCCAGACCAG 30271 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | || ||||||||||| ||||| || ||| | ||| |||| ||||||||| Sbjct 30272 CAGAGGTTGATTTTTGCTGGCAAGCAACTTGAGGATGGGAGAACATTGGCTGATTACAAT 30331 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGT 22042 ||||||||||||||||| ||||| |||| Sbjct 30332 ATTCAGAAGGAATCTACCCTTCACTTGGT 30360 >seq765 Length=559349 Score = 95.1 bits (104), Expect = 9e-15 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGA-AGCCGC 21892 ||||| || || |||| || || || || ||||| |||||| | || ||| ||| || Sbjct 186741 ATGCAGATTTTCGTTAAGACCTTGACTGGAAAAACTATTACCCTCGAGGTGGAGAGCAGC 186800 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || | ||| |||||| || || |||||| | || | |||| Sbjct 186801 -GACACTATTGATAATGTCAAGGCAAAAATACAGGACAAGGAGGGTATCCCACCAGACCA 186859 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| || ||||| ||||| ||||| || |||||| ||| |||| |||||||| Sbjct 186860 GCAGAGGCTGATCTTCGCTGGGAAACAGCTGGAAGATGGCCGGACTTTGGCTGATTACAA 186919 Query 22013 TATTCAGAAGGAATCTACTCTTCA 22036 |||||||||||||| ||||| || Sbjct 186920 CATTCAGAAGGAATCCACTCTCCA 186943 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGA-AGCCGC 21892 ||||| || ||| | ||||| || || || || || ||||| |||| || ||| || Sbjct 186513 ATGCAGATCTTTGTCAAAACCTTGACCGGAAAGACTATTACTCTGGAGGTCGAGAGCAGC 186572 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | ||||| || ||| ||||| || || | || | |||| Sbjct 186573 -GACACCATTGATAACGTTAAGGCTAAGATTCAGGATAAGGAAGGGATTCCCCCAGACCA 186631 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 || || || ||||||||||| ||||| || || || ||| |||||||||| || Sbjct 186632 GCAAAGGCTCATCTTTGCTGGAAAACAGCTCGAGGACGGTCGCACTTTGGCCGATTATAA 186691 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||||||||||||| ||||| | || | ||| | || ||||| Sbjct 186692 TATTCAGAAGGAATCTACCCTTCACCTCGTGCTCCGTCTGCGTGGAGG 186739 >seq629 Length=730630 Score = 95.1 bits (104), Expect = 9e-15 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGA-AGCCGC 21892 |||||||| || |||| || || || || ||||| |||||| |||| ||| ||| || Sbjct 102203 ATGCAAATTTTCGTTAAGACGTTGACTGGGAAAACTATTACCTTGGAGGTGGAGAGCAGC 102262 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | | ||| ||||||| || || ||||| | || | |||| Sbjct 102263 -GACACCATTGATAACGTCAAGGCAAAAATTCAGGACAAGGAGGGAATCCCACCAGACCA 102321 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| || ||||| || || || || || |||||| ||| |||| |||||||| Sbjct 102322 GCAGAGGCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGGACTTTGGCTGATTACAA 102381 Query 22013 TATTCAGAAGGAATCTACTCTTCA 22036 ||||||||||||||| ||||| || Sbjct 102382 TATTCAGAAGGAATCCACTCTCCA 102405 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGA-AGCCGC 21892 ||||| || || | ||||| || || ||||| || ||||| | ||| || ||| || Sbjct 101975 ATGCAGATCTTCGTGAAAACCTTGACCGGCAAGACTATTACTCTCGAAGTCGAGAGCAGC 102034 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | || | ||| || ||| ||||| || || | ||| | |||| Sbjct 102035 -GACACCATCGACAATGTCAAGGCTAAGATTCAGGATAAGGAAGGAATTCCTCCAGACCA 102093 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 || || || ||||||||||| || || || || || || |||||||||| || Sbjct 102094 GCAAAGGCTCATCTTTGCTGGGAAGCAGCTCGAGGACGGTCGCACCTTGGCCGATTATAA 102153 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||||||| ||||| |||||| | || | ||| | || ||||| Sbjct 102154 TATTCAGAAGGAGTCTACCCTTCATCTTGTGCTTCGTCTGCGTGGAGG 102201 >seq61 Length=2804743 Score = 95.1 bits (104), Expect = 9e-15 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| | || ||| | || || || |||||||| |||| |||| | | Sbjct 1593112 AATGCAGATTTTTGTCAAGACACTGACAGGAAAGACCATTACTTTGGAGGTGGAAAGCTC 1593171 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || | | | || ||||| ||| ||| || || ||||| | ||| | |||| Sbjct 1593172 GGACATCATTGATAATGTTAAGGCAAAGATTCAGGACAAGGAGGGAATCCCTCCAGACCA 1593231 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 |||||| | ||||||||||| || || || |||||| | ||| |||| ||| |||| Sbjct 1593232 ACAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGATGGACGAACCCTGGCAGATAACAA 1593291 Query 22013 TATTCAGAAGGAATCTACTCTTCAT 22037 |||||||||||| || ||| | ||| Sbjct 1593292 TATTCAGAAGGAGTCCACTTTGCAT 1593316 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||||||| | |||||| | || || |||||||| || ||||| || | Sbjct 1592885 ATGCAAATATTTGTGAAAACACTCACTGGGAAAACCATCACGTTGGAAGTAGAGAGTTCG 1592944 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| ||||||| || |||||||| | || | | || Sbjct 1592945 GACACCATAGACAATGTGAAGGCAAAAATTCAAGACAAAGAGGGAATCCCGCCAGATCAG 1593004 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | ||||||||||| ||||| | |||||| || |||| ||||| ||| Sbjct 1593005 CAGAGATTAATCTTTGCTGGTAAACAGATTGAAGATGGCCGTACGTTGGCTGATTATAAT 1593064 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGG 22041 || || |||||||| ||| | ||| ||| Sbjct 1593065 ATCCAAAAGGAATCAACTTTACATTTGG 1593092 >seq403 Length=1096870 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||||||| | |||||| | || || ||| |||| || ||||| || | Sbjct 1091627 ATGCAAATATTTGTGAAAACACTCACTGGGAAAGCCATCACGTTGGAAGTAGAGAGTTCG 1091568 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAA-ACCA 21952 || || | | | || | ||| ||||||| || |||||||| | | ||| | | || Sbjct 1091567 GATACCATAGACAATGTGAAGGCAAAAATTCAAGACAAAGAGGGGAT-CTTGTCAGATCA 1091509 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 |||||| | ||||||||||| ||||| || |||||| || |||| ||||| || Sbjct 1091508 GCAGAGATTAATCTTTGCTGGTAAACAGCTTGAAGATGGCCGTACGTTGGCTGATTATAA 1091449 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGT 22042 ||| || |||||||| ||| | ||| |||| Sbjct 1091448 TATCCAAAAGGAATCAACTTTACATTTGGT 1091419 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| | || ||| | || || || |||||||| ||| |||| | | Sbjct 1091400 AATGCAGATTTTTGTAAAGACACTGACAGGAAAGACCATTACTTTGGTGGTGGAAAGCTC 1091341 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || | | | || ||||| ||| ||| || | ||||| | ||| | |||| Sbjct 1091340 GGACATCATTGATAATGTTAAGGCAAAGATTCAGGACGAGGAGGGAATCCCTCCAGACCA 1091281 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 |||||| | ||||||||||| || || || |||||| | ||| |||| |||||||| Sbjct 1091280 ACAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGATGGACGAACCCTGGCAGATTACAA 1091221 Query 22013 TATTCAGAAGGAATCTACTCTTCAT 22037 |||||||||||| || ||| | ||| Sbjct 1091220 TATTCAGAAGGAGTCCACTTTGCAT 1091196 >seq687 Length=650195 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||| | || ||||| || || ||| | || || | || Sbjct 286777 ATGCAAATTTTTGTGAAAACCCTCACTGGCAAGACAATCACCCTTGAGGTTGAGAGCTCA 286836 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || ||||| || || || |||||||| | || | |||| Sbjct 286837 GACACAATTGACAATGTTAAGGCTAAGATACAGGACAAAGAGGGCATTCCACCAGACCAG 286896 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || ||||| ||||| || || ||||| ||| || | ||||| |||||| Sbjct 286897 CAGAGGCTGATCTTCGCTGGTAAGCAGCTAGAGGATGGCCGCACCCTTGCCGACTACAAT 286956 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGT 22042 ||||||||||| || ||||| ||| |||| Sbjct 286957 ATTCAGAAGGAGTCCACTCTCCATTTGGT 286985 >seq887 Length=435773 Score = 82.4 bits (90), Expect = 5e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 |||| ||||| || ||||||||||| || ||||| || ||| || ||||||||| Sbjct 324393 ACCAGCAGAGGCTCATCTTTGCTGGAAAGCAACTTGAGGATGGCCGTACACTGGCCGATT 324334 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTT 22051 |||| || ||||||||||| |||||||| |||| | ||||| Sbjct 324333 ACAACATCCAGAAGGAATCCACTCTTCACTTGGTGCTTCGTTT 324291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358092274658008