Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq765 114 1e-20 seq558 100 3e-16 seq629 96.9 3e-15 seq214 93.3 4e-14 seq955 87.8 2e-12 seq68 87.8 2e-12 seq887 86.0 6e-12 seq687 84.2 2e-11 seq574 82.4 8e-11 >seq765 Length=559349 Score = 114 bits (126), Expect = 1e-20 Identities = 143/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 ||||||||||||| |||||||| ||| || ||||| ||||| || || || |||| Sbjct 186480 TTGACTCCTTTTGGATGTTGTAATCGGCCAGGGTACGGCCATCCTCAAGCTGCTTTCCGG 186421 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 |||| |||||||| ||||| ||||| || ||||||||||| |||||| ||| | Sbjct 186420 CGAAGATGAGACGCTGCTGGTCAGGAGGGATTCCTTCTTTGTCCTGGATTTTGGCTTTGA 186361 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 | || | ||||||| | ||| ||||||| || | ||| || || || || || | Sbjct 186360 CGTTATCGATGGTGTCGCTGCTCTCGACCTCGAGAGTTATCGTCTTTCCGGTGAGGGTCT 186301 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 186300 TAACGAAGATCTGCAT 186285 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| ||||||||||| || || ||| || || || || ||||| || | Sbjct 186934 GATTCCTTCTGAATGTTGTAATCAGCCAAAGTCCGGCCATCTTCCAGCTGTTTCCCAGCG 186875 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| || || ||||| || ||||| |||||| || | Sbjct 186874 AAGATCAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGTATTTTTGCCTTGACA 186815 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | ||||||||||| || | ||||| ||||||| || || Sbjct 186814 TTATCAATAGTGTCGCTGCTCTCCACCTCGAGGGTAATAGTTTTTCCAGTCAAGGTCTTA 186755 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 186754 ACGAAAATCTGCAT 186741 >seq558 Length=819058 Score = 100 bits (110), Expect = 3e-16 Identities = 142/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | |||||| ||||| ||||| || |||| Sbjct 127078 GACTCCTTCTGGATGTTGTAGTCAGCGAGAGTACGGCCATCCTCCAGTTGCTTCCCGGCG 127019 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||| || || ||||| || || || ||||| ||| || || | | Sbjct 127018 AAGATCAGCCGCTGCTGATCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACA 126959 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||| | ||||| ||||| | || | ||| || || || || ||||| Sbjct 126958 TTG-TCGATGGTGTCCGAGGACTCAACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTT 126900 Query 138600 TACAAAAATCTGCATGG 138616 ||||| |||||||||| Sbjct 126899 CACAAAGATCTGCATGG 126883 >seq629 Length=730630 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | ||| | || | | | ||||||||||| || || ||||| Sbjct 101974 GCCACCACGGAGACGGAGAACGAGGTGAAGGGTGGACTCCTTTTGGATATTATAGTCAGC 101915 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||||| |||||| || || || |||| |||| |||||||| ||||| || || Sbjct 101914 CAAGGTACGGCCGTCCTCAAGCTGCTTCCCGGCGAAGATGAGACGCTGCTGGTCAGGTGG 101855 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| |||||| ||| | | || | |||||| | ||| || Sbjct 101854 GATCCCTTCTTTGTCTTGGATTTTGGCTTTGACGTTATCGATGGTGTCACTGCTCTCGAC 101795 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | || || || || || || || || || |||||||| Sbjct 101794 CTCGAGAGTGATAGTCTTTCCGGTGAGGGTCTTAACGAAGATCTGCAT 101747 >seq214 Length=1602240 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||| ||| | || || || || |||||||| || | Sbjct 1070155 GACTCCTTCTGAATGTTGTAATCGGCAAGGGTCCGTCCATCTTCCAGTTGTTTTCCAGCG 1070096 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 ||||||| ||||| |||||||| || || || || ||||| ||| || || | | Sbjct 1070095 AAGATTAGGCGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTCACA 1070036 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||||| | ||||| ||||||| || | || ||||| || || ||||| Sbjct 1070035 TTG-TCGATAGTGTCCGAGGACTCTACCTCGAGTGTTATGGTCTTACCCGTTAGGGTTTT 1069977 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 1069976 GACGAAGATCTGCAT 1069962 >seq955 Length=378267 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||| ||| | || || || || |||||||| || | Sbjct 125704 GACTCCTTCTGAATGTTGTAATCGGCAAGGGTCCGTCCATCTTCCAGTTGTTTTCCAGCG 125763 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 ||||||| ||||| |||||||| || || || || ||||| ||| || || | | Sbjct 125764 AAGATTAGGCGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTCACA 125823 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||||| | ||||| | ||||| || | || ||||| || || ||||| Sbjct 125824 TTG-TCGATAGTGTCCGAGGACTCAAACTCGAGTGTTATGGTCTTACCCGTTAGGGTTTT 125882 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 125883 GACGAAGATCTGCAT 125897 >seq68 Length=2695109 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||||||||| ||||| | ||| || ||||| || ||||| || | | Sbjct 1666238 GACTCCTTTTGAATGTTATAGTCAGCAAGAGTGCGTCCATCCTCAAGCTGTTTGCCAGCA 1666297 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTT--A 138538 |||| | | ||| ||||| || || || ||||| || || ||| | || ||||| Sbjct 1666298 AAGATCAACCTCTGCTGGTCTGGTGGGATTCCTTCCTTATC-CTGAATCTTGGTTTTCAC 1666356 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | |||||||| |||||||| | || | || || ||||| || |||| Sbjct 1666357 ATTG-TCAATGGTGTCGGAGCTTTCCACCTCAAGGGTGATGGTCTTTCCAGTGAGGGTTT 1666415 Query 138599 TTACAAAAATCTGCAT 138614 | ||||| || ||||| Sbjct 1666416 TCACAAAGATTTGCAT 1666431 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| | ||| | || || || | | | |||||||| || |||||||||||| Sbjct 1665521 CCACCTCTGAGACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCA 1665580 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || ||| ||||| || || || || | | |||| || | ||| ||||| || || Sbjct 1665581 AGGGTGCGCCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCTGGGGGG 1665640 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| || ||| | |||| || | ||||| | ||| || Sbjct 1665641 ATGCCTTCCTTGTCCTGGATCTTAGCTTTGACATTG-TCAATTGTGTCTGAGCTCTCAAC 1665699 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| ||||||| ||| || ||||| |||||||| Sbjct 1665700 TTCCAAGGTGATTGTTTTCCCAGTCAAAGTCTTCACAAATATCTGCAT 1665747 Score = 82.4 bits (90), Expect = 8e-11 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGA--GTCCT 138463 || ||||| | | | |||||||| |||||||||||||| || ||| |||| |||| Sbjct 1665767 ACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAGTC-AGCA-AGTGTGCGACCATCCT 1665824 Query 138464 CGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGG 138523 | || ||||| || | | |||| || | ||| ||||| || || || || || ||||| Sbjct 1665825 CAAGCTGTTTGCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCT 1665884 Query 138524 TGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTT 138582 |||||| ||| | |||| || | ||||| | ||| || || | || | || Sbjct 1665885 GGATTTTAGCTTTAACATTG-TCGATTGTGTCTGAGCTCTCAACTTCCAAGGTAATTGTC 1665943 Query 138583 TTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || ||||| | ||| || ||||| |||||||| Sbjct 1665944 TTCCCAGTTAAAGTCTTCACAAAGATCTGCAT 1665975 >seq887 Length=435773 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || | |||||| | || || || | | || ||||| || |||||||| ||| Sbjct 324281 GCCACCCCTCAAACGAAGCACCAAGTGAAGAGTGGATTCCTTCTGGATGTTGTAATCGGC 324340 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||||| ||||| ||||| || || | | |||| || | ||| ||||| || || Sbjct 324341 CAGTGTACGGCCATCCTCAAGTTGCTTTCCAGCAAAGATGAGCCTCTGCTGGTCAGGTGG 324400 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564 || ||||| || || ||| | || | ||| | |||| | | ||||| | ||| Sbjct 324401 GATCCCTTCCTTATCC-TGAATCTTGGCTTTCACGTTGT-CAATAGTGTCTGAACTTTCC 324458 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| | || | || || ||||| || ||||| |||||||||||||| Sbjct 324459 ACCTCTAGAGTGATAGTCTTCCCAGTAAGGGTTTTCACAAAAATCTGCAT 324508 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||||| ||| ||||| | |||||||||| ||||| |||||||| | Sbjct 323628 CCACCACGCAGACGCAGAACCAAATGAAGAGTTGACTCCTTCTGAATATTGTAGTCAGCC 323687 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 ||| | | |||||| ||||| || || | | | || | | ||| | ||| || || Sbjct 323688 GAAGTTCTCCCGTCCTCAAGTTGCTTTCCAGCAAAAATCAACCTCTGCTAGTCTGGGGGA 323747 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| || || || | ||||| | | || || | ||| || Sbjct 323748 ATCCCTTCCTTGTCTTGTATCTTAGACTTGACATTGT-CAATTGTATCCGAGCTCTCAAC 323806 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||| | || | || || ||||| || || || ||||||||||||||| Sbjct 323807 CTCCAATGTGATGGTCTTTCCAGTGAGTGTCTTGACAAAAATCTGCATG 323855 >seq687 Length=650195 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465 || ||||| | | | |||||||| |||||||||||||| || || || || || Sbjct 286757 ACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCCAGGGTGCGGCCATCTTCT 286698 Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525 || || || || | | |||| || | ||| ||||| || || || || |||||||| | Sbjct 286697 AGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCAGGTGGAATTCCCTCTTTGTCCTGG 286638 Query 138526 ATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTT 138584 || || || | |||| || | |||||| | |||||||||| || | || || Sbjct 286637 ATCTTAGCCTTAACATTG-TCAATGGTGTCTGAGCTTTCCACCTCGAGGGTGATTGTCTT 286579 Query 138585 ACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || ||||| || || |||||||| Sbjct 286578 TCCAGTAAGGGTTTTCACGAAGATCTGCAT 286549 >seq574 Length=792550 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/197 (70%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| ||||||||||| | ||| || |||||| || || || || | Sbjct 430488 GACTCCTTTTGGATGTTGTAGTCAGCGAGAGTGCGGCCGTCCTCAAGCTGCTTCCCAGCG 430429 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||| || || ||||| || || || ||||| ||| || || | | Sbjct 430428 AAGATCAGCCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACA 430369 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||| || | ||||| ||||| | || | ||| || || || | ||||| Sbjct 430368 TTG-TCGATGGTATCTGATGACTCAACCTCTAGTGTTATCGTCTTCCCCGTTAAGGTTTT 430310 Query 138600 TACAAAAATCTGCATGG 138616 || || |||||||||| Sbjct 430309 CACGAAGATCTGCATGG 430293 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/197 (70%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| ||||||||||| | ||| || |||||| || || || || | Sbjct 450367 GACTCCTTTTGGATGTTGTAGTCAGCGAGAGTGCGGCCGTCCTCAAGCTGCTTCCCAGCG 450308 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||| || || ||||| || || || ||||| ||| || || | | Sbjct 450307 AAGATCAGCCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACA 450248 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||| || | ||||| ||||| | || | ||| || || || | ||||| Sbjct 450247 TTG-TCGATGGTATCTGATGACTCAACCTCTAGTGTTATCGTCTTCCCCGTTAAGGTTTT 450189 Query 138600 TACAAAAATCTGCATGG 138616 || || |||||||||| Sbjct 450188 CACGAAGATCTGCATGG 450172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496216173157440