Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq61 98.7 7e-16 seq616 95.1 8e-15 seq154 95.1 8e-15 seq68 95.1 8e-15 seq1759 84.2 2e-11 >seq61 Length=2804743 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || |||| ||| || ||||||| ||||| ||| ||||| ||||||||||| ||| Sbjct 1593111 CCACCACGCAGACGAAGCGCCAAATGTAAAGTTGATTCCTTTTGGATATTATAATCAGCC 1593052 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || || |||| || | ||||| || |||| ||||| | ||||||||| | || Sbjct 1593051 AACGTACGGCCATCTTCAATCTGTTTACCAGCAAAGATTAATCTCTGCTGATCTGGCGGG 1592992 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || |||||||| |||||| || | | ||| ||||| | || || || Sbjct 1592991 ATTCCCTCTTTGTCTTGAATTTTTGCCTTCACATTGTCTATGGTGTCCGAACTCTCTACT 1592932 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || ||||| || || | ||||| || || || ||||| Sbjct 1592931 TCCAACGTGATGGTTTTCCCAGTGAGTGTTTTCACAAATATTTGCAT 1592885 >seq616 Length=741428 Score = 95.1 bits (104), Expect = 8e-15 Identities = 163/233 (70%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || | ||| || || || | |||||| ||| ||| || ||||||||||||| Sbjct 398274 CATC-CCTCCCCTCAATCGGAGAACGAGATGCAAGGTGGATTCCTTCTGTATATTATAAT 398332 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | || | || |||| |||| || || ||| | || || || |||||||| || | Sbjct 398333 CAGCGAGGGTCCGACCATCCTCCAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCAG 398392 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTT 39666 || | |||||| ||||| | | | || | | | ||| | | | ||||| | ||| Sbjct 398393 GAGGGATGCCTTCCTTGTC-CTGAATCTTGGCCTTAACGTTGTCGATGGTGTCAGAGCTC 398451 Query 39667 TCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || |||| || || || || || |||| ||| || |||||||||||||| Sbjct 398452 TCAACCTCCAGGGTTATAGTCTTTCCGGTTAGAGTCTTGACGAAGATCTGCAT 398504 >seq154 Length=1955999 Score = 95.1 bits (104), Expect = 8e-15 Identities = 163/233 (70%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || | ||| || || || | |||||| ||| ||| || ||||||||||||| Sbjct 1202718 CATC-CCTCCCCTCAATCGGAGAACGAGATGCAAGGTGGATTCCTTCTGTATATTATAAT 1202776 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | || | || |||| |||| || || ||| | || || || |||||||| || | Sbjct 1202777 CAGCGAGGGTCCGACCATCCTCCAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCAG 1202836 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTT 39666 || | |||||| ||||| | | | || | | | ||| | | | ||||| | ||| Sbjct 1202837 GAGGGATGCCTTCCTTGTC-CTGAATCTTGGCCTTAACGTTGTCGATGGTGTCAGAGCTC 1202895 Query 39667 TCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || |||| || || || || || |||| ||| || |||||||||||||| Sbjct 1202896 TCAACCTCCAGGGTTATAGTCTTTCCGGTTAGAGTCTTGACGAAGATCTGCAT 1202948 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 39501 CAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCG 39560 ||| || || || | |||||| ||| ||| || |||||||||||||| || | || Sbjct 1195832 CAATCGGAGAACGAGATGCAAGGTGGATTCCTTCTGTATATTATAATCAGCGAGGGTCCG 1195891 Query 39561 TTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTC 39620 |||| |||| || || ||| | || || || |||||||| || | || | |||||| Sbjct 1195892 ACCATCCTCCAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGGATGCCTTC 1195951 Query 39621 TTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCACGTCCAAAG 39679 ||||| | | | || | | | ||| | | | ||||| | ||| || || |||| | Sbjct 1195952 CTTGTC-CTGAATCTTGGCCTTAACGTTGTCGATGGTGTCAGAGCTCTCAACCTCCAGGG 1196010 Query 39680 TAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || || || || |||| ||| || |||||||||||||| Sbjct 1196011 TTATAGTCTTTCCGGTTAGAGTCTTGACGAAGATCTGCAT 1196050 >seq68 Length=2695109 Score = 95.1 bits (104), Expect = 8e-15 Identities = 153/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 39504 ACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTC 39563 ||| || |||||||| | ||| || || || || || || || || | ||| | Sbjct 1665760 ACGGAGGACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCAAGTGTGCGACC 1665819 Query 39564 ATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTT 39623 ||| || | ||||| || |||| || | | |||||| || | ||| | ||| || || Sbjct 1665820 ATCCTCAAGCTGTTTGCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTT 1665879 Query 39624 GTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTA 39681 ||| ||||| ||||| | |||| | |||||||| ||| || || ||||| ||| Sbjct 1665880 GTCCTGGATTTTAGCTTTAACATTGTCGAT--TGTGTCTGAGCTCTCAACTTCCAAGGTA 1665937 Query 39682 ATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || |||||||| || || ||||||||||| Sbjct 1665938 ATTGTCTTCCCAGTTAAAGTCTTCACAAAGATCTGCAT 1665975 >seq1759 Length=69365 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || | ||| || || || | |||||| ||| ||| || |||||||||||||| || Sbjct 30467 CCTCCCCTCAATCGGAGAACGAGATGCAAGGTGGATTCCTTCTGTATATTATAATCAGCA 30526 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | |||| |||| ||| || || | || || || || ||||| || | || Sbjct 30527 AGGGTCCTGCCATCCTCCAGTTGCTTTCCAGCGAAGATCAAGCGTTGCTGGTCAGGAGGG 30586 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | |||||| ||||| || || ||| | | |||| | ||||| | ||| |||| Sbjct 30587 ATGCCTTCCTTGTCCTGGATCTTAGCTTTGACATTGTCGATG--GTGTCGGAGCTCTCCA 30644 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | |||| || || || || || || | ||| || |||||||||||||| Sbjct 30645 CTTCCAGGGTTATGGTCTTGCCGGTAAGAGTCTTGACGAAGATCTGCAT 30693 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || | |||||| || |||| ||||| |||| |||||| || |||||||| ||||| Sbjct 30695 CCTCCCCTCAAACGGAGAACCAGATGCAGAGTGGATTCTTTCTGAATATTATAGTCGGCA 30754 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | || |||| || | ||| || ||| | || || | | |||||| || | || Sbjct 30755 AGGGTCCGACCATCCTCAAGTTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCAGGAGGG 30814 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||| || || || || ||| | | | | |||||| | ||| || || Sbjct 30815 ATCCCTTCCTTATCTTGGATCTTGGCTTTGACGTTATCAATTGTGTCAGAGCTCTCGACC 30874 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGTCG 39723 || | ||| || || || || || | ||||| ||||||||||||||| || Sbjct 30875 TCAAGAGTTATGGTCTTGCCGGTGAGGGTTTTAACGAAGATCTGCATGCCG 30925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347338051458716