Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq3681 172 7e-38 seq3123 172 7e-38 seq262 172 7e-38 >seq3681 Length=11741 Score = 172 bits (190), Expect = 7e-38 Identities = 298/425 (70%), Gaps = 16/425 (4%) Strand=Plus/Plus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTA---TC 15973 ||| || || || | | ||| ||||| || ||||||| ||||| || |||| || Sbjct 6529 ATCTAGAATGTCTGCCCTATTAGTTGCTGCAATGACAATGATACCAGT---GTTACCCTC 6585 Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 |||||||||||| ||||||||||||||||||| || ||||| | ||||||||| || Sbjct 6586 AAAACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGTTCTCTTTCATCATTTCCT-- 6643 Query 16034 CATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGAT 16090 |||| |||| || | |||| |||| || |||||||| ||||| | || || || Sbjct 6644 -CCACCAATGCCAGTACCTCTTTGCCTTCCAACAGCATCAATTTCATCCACAAATACAAT 6702 Query 16091 GCATGGTTGATTTTC-GCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACAC 16149 ||| || ||| || | | ||| ||| ||||| || || | ||| || |||| Sbjct 6703 GCAAGGAGCATTATCTTTGGCCTTCTTGAAA-AGATCACGGACTCTAGAGGCACCAACAC 6761 Query 16150 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCA 16208 ||||||||||||| ||||| | | | | | || | || || || ||| || |||| Sbjct 6762 CAACAAACATCTCAACAAATTCAGAACCAG-ATATGGAGAAAAATGGAACACCAGCTTCA 6820 Query 16209 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCA 16268 || |||||||| ||| ||||||||||| || || ||||| ||| | || || || Sbjct 6821 CCAGCAATGGCCTTGGCTAGAAGAGTCTTTCCAGTTCCTGGAGGACCAACAAGAAGAACA 6880 Query 16269 CCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACA 16328 ||| |||||| || ||| | || | ||||||| || | ||| ||||| || ||| Sbjct 6881 CCTTTTGGAATGCGAGCCCCAACTGCAGTGAATCTCTCTGGCTTCTTGAGAAACTCAACA 6940 Query 16329 ATCTC 16333 | ||| Sbjct 6941 ACCTC 6945 >seq3123 Length=17441 Score = 172 bits (190), Expect = 7e-38 Identities = 298/425 (70%), Gaps = 16/425 (4%) Strand=Plus/Minus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTA---TC 15973 ||| || || || | | ||| ||||| || ||||||| ||||| || |||| || Sbjct 4553 ATCTAGAATGTCTGCCCTATTAGTTGCTGCAATGACAATGATACCAGT---GTTACCCTC 4497 Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 |||||||||||| ||||||||||||||||||| || ||||| | ||||||||| || Sbjct 4496 AAAACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGTTCTCTTTCATCATTTCCT-- 4439 Query 16034 CATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGAT 16090 |||| |||| || | |||| |||| || |||||||| ||||| | || || || Sbjct 4438 -CCACCAATGCCAGTACCTCTTTGCCTTCCAACAGCATCAATTTCATCCACAAATACAAT 4380 Query 16091 GCATGGTTGATTTTC-GCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACAC 16149 ||| || ||| || | | ||| ||| ||||| || || | ||| || |||| Sbjct 4379 GCAAGGAGCATTATCTTTGGCCTTCTTGAAA-AGATCACGGACTCTAGAGGCACCAACAC 4321 Query 16150 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCA 16208 ||||||||||||| ||||| | | | | | || | || || || ||| || |||| Sbjct 4320 CAACAAACATCTCAACAAATTCAGAACCAG-ATATGGAGAAAAATGGAACACCAGCTTCA 4262 Query 16209 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCA 16268 || |||||||| ||| ||||||||||| || || ||||| ||| | || || || Sbjct 4261 CCAGCAATGGCCTTGGCTAGAAGAGTCTTTCCAGTTCCTGGAGGACCAACAAGAAGAACA 4202 Query 16269 CCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACA 16328 ||| |||||| || ||| | || | ||||||| || | ||| ||||| || ||| Sbjct 4201 CCTTTTGGAATGCGAGCCCCAACTGCAGTGAATCTCTCTGGCTTCTTGAGAAACTCAACA 4142 Query 16329 ATCTC 16333 | ||| Sbjct 4141 ACCTC 4137 >seq262 Length=1443145 Score = 172 bits (190), Expect = 7e-38 Identities = 298/426 (70%), Gaps = 18/426 (4%) Strand=Plus/Minus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTA---TC 15973 ||| || || || | | ||| || || || ||||||| ||||| || |||| || Sbjct 905646 ATCTAGAATGTCTGCCCTATTAGTAGCTGCAATGACAATGATACCAGT---GTTACCCTC 905590 Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 |||||||||||| ||||||||||||||||||| || ||||| | ||||||||| || Sbjct 905589 AAAACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGTTCTCTTTCATCATTTCCT-- 905532 Query 16034 CATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGAT 16090 |||| || | || | |||| |||| || |||||||| ||||| | || || || Sbjct 905531 -CCACCAATGCCGGTACCTCTTTGCCTTCCAACAGCATCAATTTCATCCACAAATACAAT 905473 Query 16091 GCATGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACA 16148 ||| || |||||| || |||| |||||||| || || | ||| || ||| Sbjct 905472 GCAAGGAGCATTTTCTTTGGC--CTTCTTGAAGAGATCACGGACCCTAGAGGCACCAACA 905415 Query 16149 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTC 16207 |||||||||||||| ||||| | | | | | || | || || || ||| || ||| Sbjct 905414 CCAACAAACATCTCAACAAACTCAGAACCAG-ATATGGAGAAAAATGGAACACCAGCTTC 905356 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 16267 ||| |||||||| ||| ||||||||||| || || ||||| ||| | || ||| | Sbjct 905355 ACCAGCAATGGCCTTGGCTAGAAGAGTCTTTCCGGTTCCTGGAGGACCAACAAGAAGGAC 905296 Query 16268 ACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 |||| |||||| || ||| | || | ||||||| || | ||| ||||| || || Sbjct 905295 ACCTTTTGGAATGCGAGCCCCAACTGCAGTGAATCTCTCCGGCTTCTTCAGAAACTCAAC 905236 Query 16328 AATCTC 16333 | ||| Sbjct 905235 TACCTC 905230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620684577845440