Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1752 109 6e-19 seq262 109 6e-19 seq378 84.2 3e-11 seq521 82.4 9e-11 seq48 82.4 9e-11 >seq1752 Length=70440 Score = 109 bits (120), Expect = 6e-19 Identities = 131/177 (74%), Gaps = 1/177 (1%) Strand=Plus/Plus Query 119510 AAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCT 119569 ||||||| |||| || ||||| | ||| || ||| | ||| ||||| | || | Sbjct 24550 AAGCCCT-CATCTCGCGAGATCAACTCGTTTGAGAATGTTAATCCCGGCATCAAGCCACG 24608 Query 119570 TTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGC 119629 |||||||||||||| || || ||||| ||||||||||| || || |||||||||||||| Sbjct 24609 CTTCTTTAGCCAAAATATCGCGCAAAAGCTTCCAGAAAAAAATATTCCCTCCACACAGGC 24668 Query 119630 GAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCA 119686 ||||||| || | ||| ||||||| || |||| |||| |||| ||||| Sbjct 24669 AAAAGCGATCAGCCTCTCCGCAAAAGTCTCCGAACCATCGATCCACCTGAGGGCCCA 24725 >seq262 Length=1443145 Score = 109 bits (120), Expect = 6e-19 Identities = 306/463 (66%), Gaps = 14/463 (3%) Strand=Plus/Minus Query 11535 ATCAAGAATATCGACACGGTTTGTAGCGGCAATGACTACAATGCCAGTCTCATTGTCGAA 11594 ||| ||||| || | | || ||||| |||||||| | || ||||| | | || || Sbjct 905646 ATCTAGAATGTCTGCCCTATTAGTAGCTGCAATGACAATGATACCAGTGTTACCCTCAAA 905587 Query 11595 ACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCAT 11654 ||| ||||||||||| | ||||||||| | |||||||| | ||||| || | | Sbjct 905586 ACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGTTCTCTTTCATCATT-----TCCT 905532 Query 11655 ACCACC--TGCCG--AACGCTT--CTTACCGACAGCGTCAATCTCATCGATGAATACGAT 11708 ||||| ||||| | | ||| | | || ||||| ||||| ||||| | ||||| || Sbjct 905531 -CCACCAATGCCGGTACCTCTTTGCCTTCCAACAGCATCAATTTCATCCACAAATACAAT 905473 Query 11709 ACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACC 11768 || || || | |||| | ||| || ||||| || | || |||||||| Sbjct 905472 GCAAGGAGCATTTTCTTTGGCCTTCTTGAAGAGATCACGGACCCTAGAGGCACCAACACC 905413 Query 11769 TACGAACATCTCAACGAAGTTTGCGGCAGAACACTGA-ATGAAGGGAACATTAGACTCAC 11827 || ||||||||||| || | | ||| | | || | || |||||| || |||| Sbjct 905412 AACAAACATCTCAACAAACTCAGAACCAG-ATATGGAGAAAAATGGAACACCAGCTTCAC 905354 Query 11828 CAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGC 11887 |||| ||||| || || |||||||| || || || || | |||| | |||||| | | Sbjct 905353 CAGCAATGGCCTTGGCTAGAAGAGTCTTTCCGGTTCCTGGAGGACCAACAAGAAGGACAC 905294 Query 11888 CACGGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAA 11947 | || || || ||| | || | | | ||| |||||||| || || || || | Sbjct 905293 CTTTTGGAATGCGAGCCCCAACTGCAGTGAATCTCTCCGGCTTCTTCAGAAACTCAACTA 905234 Query 11948 TCTCCTCAAGTTCCTCCTTGGCGGAGTCGATACCCTCAACATC 11990 |||| | |||| ||| || |||| || ||||||| Sbjct 905233 CCTCCATGAAATCCTGCTTTGCTTCATCGACTCCGGCAACATC 905191 >seq378 Length=1141677 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||| | ||||| | | |||||| ||||||||||||||| Sbjct 980236 TAGCTCAGTTGGTTAGAGCGTTGGTCTTATGAGCCGAAGGTCGCGGGTTCGAGCCCCGCC 980177 Query 136777 GGGAACAGCTTTTAGATATAtttttt 136802 |||| || |||| ||| ||||||| Sbjct 980176 GGGACCAAGTTTTCCATAAATTTTTT 980151 >seq521 Length=892794 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/87 (82%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCG-T 136775 ||||||||||||||||||||| ||||| ||||||| |||||| | |||||||| || | Sbjct 399790 TAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCGCAGGTTCGAGACCTGCA 399849 Query 136776 TGGGAACAGCTTTTAGATATAtttttt 136802 |||| | |||||| | |||||||| Sbjct 399850 TGGGCCAATATTTTAGTTTTATTTTTT 399876 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/87 (82%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCG-T 136775 ||||||||||||||||||||| ||||| ||||||| |||||| | |||||||| || | Sbjct 437129 TAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCGCAGGTTCGAGACCTGCA 437188 Query 136776 TGGGAACAGCTTTTAGATATAtttttt 136802 |||| | |||||| | |||||||| Sbjct 437189 TGGGCCAATATTTTAGTTTTATTTTTT 437215 >seq48 Length=2939403 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/87 (82%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCG-T 136775 ||||||||||||||||||||| ||||| ||||||| |||||| | |||||||| || | Sbjct 1453056 TAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCGCAGGTTCGAGACCTGCA 1452997 Query 136776 TGGGAACAGCTTTTAGATATAtttttt 136802 |||| | |||||| | |||||||| Sbjct 1452996 TGGGCCAATATTTTAGTTTTATTTTTT 1452970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588921136885600