Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq262 181 1e-40 seq3681 176 5e-39 seq3123 176 5e-39 seq320 91.5 2e-13 seq219 86.0 7e-12 >seq262 Length=1443145 Score = 181 bits (200), Expect = 1e-40 Identities = 295/421 (70%), Gaps = 8/421 (2%) Strand=Plus/Minus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9283 ||| || || || | | ||| || || || ||||||| ||||| || | | ||||| Sbjct 905646 ATCTAGAATGTCTGCCCTATTAGTAGCTGCAATGACAATGATACCAGTGTTACCCTCAAA 905587 Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343 ||||||||| ||||||||||| ||||||| || ||||| | ||||||||| || Sbjct 905586 ACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGTTCTCTTTCATCATTTCCT---CC 905530 Query 9344 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 |||| || | || | |||| |||| || |||||||| ||||| | || ||||| || Sbjct 905529 ACCAATGCCGGTACCTCTTTGCCTTCCAACAGCATCAATTTCATCCACAAATACAATGCA 905470 Query 9401 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAAC 9460 || |||||| ||| | | |||||||| || ||||| ||| || |||||||| Sbjct 905469 AGGAGCATTTTCTTTGGCCTTCTTGAAGAGATCACGGACCCTAGAGGCACCAACACCAAC 905410 Query 9461 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9519 ||||||||| ||||| | | | | | || | || || || ||| || |||||| | Sbjct 905409 AAACATCTCAACAAACTCAGAACCAG-ATATGGAGAAAAATGGAACACCAGCTTCACCAG 905351 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCC 9579 ||||||| ||| ||||||||||| || || ||||| ||| | || ||| |||| Sbjct 905350 CAATGGCCTTGGCTAGAAGAGTCTTTCCGGTTCCTGGAGGACCAACAAGAAGGACACCTT 905291 Query 9580 GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCT 9639 |||||| || ||| | || | ||||||| || | ||| ||||| || || | || Sbjct 905290 TTGGAATGCGAGCCCCAACTGCAGTGAATCTCTCCGGCTTCTTCAGAAACTCAACTACCT 905231 Query 9640 C 9640 | Sbjct 905230 C 905230 >seq3681 Length=11741 Score = 176 bits (194), Expect = 5e-39 Identities = 294/421 (70%), Gaps = 8/421 (2%) Strand=Plus/Plus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9283 ||| || || || | | ||| || || || ||||||| ||||| || | | ||||| Sbjct 6529 ATCTAGAATGTCTGCCCTATTAGTTGCTGCAATGACAATGATACCAGTGTTACCCTCAAA 6588 Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343 ||||||||| ||||||||||| ||||||| || ||||| | ||||||||| || Sbjct 6589 ACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGTTCTCTTTCATCATTTCCT---CC 6645 Query 9344 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 |||| |||| || | |||| |||| || |||||||| ||||| | || ||||| || Sbjct 6646 ACCAATGCCAGTACCTCTTTGCCTTCCAACAGCATCAATTTCATCCACAAATACAATGCA 6705 Query 9401 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAAC 9460 || ||| || ||| | | || ||||| || || || ||| || |||||||| Sbjct 6706 AGGAGCATTATCTTTGGCCTTCTTGAAAAGATCACGGACTCTAGAGGCACCAACACCAAC 6765 Query 9461 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9519 ||||||||| ||||| | | | | | || | || || || ||| || |||||| | Sbjct 6766 AAACATCTCAACAAATTCAGAACCAG-ATATGGAGAAAAATGGAACACCAGCTTCACCAG 6824 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCC 9579 ||||||| ||| ||||||||||| || || ||||| ||| | || || |||| Sbjct 6825 CAATGGCCTTGGCTAGAAGAGTCTTTCCAGTTCCTGGAGGACCAACAAGAAGAACACCTT 6884 Query 9580 GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCT 9639 |||||| || ||| | || | ||||||| || | ||||||||| || |||| || Sbjct 6885 TTGGAATGCGAGCCCCAACTGCAGTGAATCTCTCTGGCTTCTTGAGAAACTCAACAACCT 6944 Query 9640 C 9640 | Sbjct 6945 C 6945 >seq3123 Length=17441 Score = 176 bits (194), Expect = 5e-39 Identities = 294/421 (70%), Gaps = 8/421 (2%) Strand=Plus/Minus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9283 ||| || || || | | ||| || || || ||||||| ||||| || | | ||||| Sbjct 4553 ATCTAGAATGTCTGCCCTATTAGTTGCTGCAATGACAATGATACCAGTGTTACCCTCAAA 4494 Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343 ||||||||| ||||||||||| ||||||| || ||||| | ||||||||| || Sbjct 4493 ACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGTTCTCTTTCATCATTTCCT---CC 4437 Query 9344 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 |||| |||| || | |||| |||| || |||||||| ||||| | || ||||| || Sbjct 4436 ACCAATGCCAGTACCTCTTTGCCTTCCAACAGCATCAATTTCATCCACAAATACAATGCA 4377 Query 9401 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAAC 9460 || ||| || ||| | | || ||||| || || || ||| || |||||||| Sbjct 4376 AGGAGCATTATCTTTGGCCTTCTTGAAAAGATCACGGACTCTAGAGGCACCAACACCAAC 4317 Query 9461 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9519 ||||||||| ||||| | | | | | || | || || || ||| || |||||| | Sbjct 4316 AAACATCTCAACAAATTCAGAACCAG-ATATGGAGAAAAATGGAACACCAGCTTCACCAG 4258 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCC 9579 ||||||| ||| ||||||||||| || || ||||| ||| | || || |||| Sbjct 4257 CAATGGCCTTGGCTAGAAGAGTCTTTCCAGTTCCTGGAGGACCAACAAGAAGAACACCTT 4198 Query 9580 GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCT 9639 |||||| || ||| | || | ||||||| || | ||||||||| || |||| || Sbjct 4197 TTGGAATGCGAGCCCCAACTGCAGTGAATCTCTCTGGCTTCTTGAGAAACTCAACAACCT 4138 Query 9640 C 9640 | Sbjct 4137 C 4137 >seq320 Length=1281786 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107177 GGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTG 107236 ||||| ||||||||||| || || || || || || ||||| || || |||||| | Sbjct 82163 GGTGTTCCAGCATTGAAAAGCGTAGGGGTAGCATGTGTGAACCAACGCTGAGACATCAAG 82222 Query 107237 TCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATA 107296 | |||||| | | || || |||||||| || |||||| || | || || | ||| Sbjct 82223 TAGTATGTTTTGACAACGGAGTCAATGTCATCTTTGTGGATACCAACAGCAACCCTCATC 82282 Query 107297 AACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTCA 107356 ||||||| ||| ||| |||| | | | |||| | | ||| ||| | ||||| Sbjct 82283 AACATGTGTTGTGGTCTTTCTACAATTTTCCCATTAACCTTCAAAAGGTAGGACCTCTCA 82342 Query 107357 AGGGTTTTGAGACCAAAGTAACCAAAATCA 107386 || ||||||| ||||||||| || | ||| Sbjct 82343 AGAGTTTTGAAGCCAAAGTAATCATAGTCA 82372 >seq219 Length=1577337 Score = 86.0 bits (94), Expect = 7e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 107180 GTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCG 107239 || ||||||||||| ||||| ||||| || || ||||| || || |||||| || | Sbjct 924968 GTTCCAGCATTGAAAAGGGTAGGTGTAGCATGTGTGAACCAACACTGAGACATCAAGTGG 924909 Query 107240 TATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAAC 107299 ||||| || | ||||| |||||||| || |||||| || | ||| || | ||| | Sbjct 924908 TATGTTTCGACAACAGAGTCAATGTCATCTTTGTGGATACCAACGGCAACCCTCATCCAT 924849 Query 107300 ATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTCAAGG 107359 |||| ||| ||| || | | | | | | | | | | ||| || | ||||||| Sbjct 924848 ATGTGTTGTGGTCTTACAACAATGTTCCTACCAACCTTCAAAAGGTACGACCTCTCAAGA 924789 Query 107360 GTTTTGAGACCAAAGTA 107376 ||||||| |||||||| Sbjct 924788 GTTTTGAAGCCAAAGTA 924772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589925843288480