Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq345 509 2e-139 seq43 450 2e-121 seq404 414 1e-110 >seq345 Length=1218342 Score = 509 bits (564), Expect = 2e-139 Identities = 645/887 (73%), Gaps = 0/887 (0%) Strand=Plus/Minus Query 168596 TTTATTGCTGCACCACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTA 168655 || |||||||| || || || ||||| || || || | |||||||| | | ||||| Sbjct 658056 TTCATTGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTAGATCTCTA 657997 Query 168656 ATGTATGGAAACAACATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTA 168715 | ||||||||||| || || || ||||| || |||| |||| | || || ||| | Sbjct 657996 CTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTACAGCTATAGGTTTG 657937 Query 168716 CACTTCTACCCAATTTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCT 168775 || || |||||||| |||||||| || | | ||||| |||||||| ||||| |||||| Sbjct 657936 CATTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCT 657877 Query 168776 TACCAGTTGGTAATCTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGG 168835 || || | | | | |||||| || | || | || ||||||||| | ||||| Sbjct 657876 TATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 657817 Query 168836 GAATTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTA 168895 ||| | | | | | |||||| | |||||||| |||||| |||||||| || || Sbjct 657816 GAACTTAGTTTCCGTTTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTT 657757 Query 168896 TCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGT 168955 | || || ||| || ||| | | || ||| |||||||||| || ||||||||| Sbjct 657756 GCAGCTGCTACTGCTGTTTTCTTGATTTATCCAATTGGTCAGGGAAGCTTTTCTGATGGT 657697 Query 168956 ATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAAC 169015 |||||||||||||| ||||| || |||||||| ||| | |||||||| || ||||||||| Sbjct 657696 ATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAAC 657637 Query 169016 ATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTC 169075 || |||||||| || || || ||| ||| ||||| ||| | ||||| || || |||||| Sbjct 657636 ATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTC 657577 Query 169076 TCCGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAA 169135 || ||||||||||| | ||||| ||| | | ||||| || || || || | ||| Sbjct 657576 AGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAA 657517 Query 169136 TCTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCA 169195 ||| || | ||||||| ||||||||||| |||||||| |||||||| || || || Sbjct 657516 TCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCT 657457 Query 169196 CATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTT 169255 ||||| || || || |||| |||||||| ||||| |||| ||||||||| | | | Sbjct 657456 CATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTCCAACAACTCTCGTTTTTTG 657397 Query 169256 CACTTCTTCCTAGCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGT 169315 || |||||| |||| || || || ||| || | ||||| | || | ||||| | Sbjct 657396 CATTTCTTCTTAGCTACTTTGCCTGTAGTAGGTATTTGGTTCATTGCTTTAGGTATTAGC 657337 Query 169316 ACAATGGCATTCAACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGT 169375 || |||| |||||| | || | || || || |||||||| || || ||| | | ||| Sbjct 657336 ACTATGGTTTTCAACCTAAATGATTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGT 657277 Query 169376 AAGATCATTCCTACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATG 169435 | | ||| ||| |||| ||| | ||||| | || ||||||||||||||||| ||| Sbjct 657276 CATGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATG 657217 Query 169436 CATGAGCGTAACGCTCACAACTTCCCACTAGACTTAGCATCTGCTGA 169482 ||||| ||||| ||||| |||||||| |||||| |||| ||| ||| Sbjct 657216 CATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCTGTTGA 657170 >seq43 Length=3080068 Score = 450 bits (498), Expect = 2e-121 Identities = 558/764 (73%), Gaps = 0/764 (0%) Strand=Plus/Minus Query 168614 GTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAACATC 168673 || ||||| || || || | |||||||| | || ||||| | ||||||||||| || Sbjct 2031173 GTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATT 2031114 Query 168674 ATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAATTTGG 168733 || || ||||| || |||| |||| || || ||| | || || |||||||| ||| Sbjct 2031113 ATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAATATGG 2031054 Query 168734 GAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAATCTTC 168793 ||||| || | | ||||| |||||||||||||| ||||||| || | | | || Sbjct 2031053 GAAGCGGCATCCGTTGATGAATGGTTATATAATGGCAGTCCTTATGAGCTAATTGTTTTA 2030994 Query 168794 CACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAGACTA 168853 |||||| || | || | || ||||||||| | |||||||| | | | | || Sbjct 2030993 CACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTG 2030934 Query 168854 GGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTA 168913 |||||| | |||||||| |||||| |||||||| || || | || || ||| || Sbjct 2030933 GGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 2030874 Query 168914 TTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCT 168973 ||| | | || ||| |||||||||| || ||||||||||||||||||||||| ||| Sbjct 2030873 TTCTTGATTTATCCAATTGGTCAGGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCT 2030814 Query 168974 GGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTC 169033 || || |||||||| ||| | |||||||| || ||||||||||| |||||||| || || Sbjct 2030813 GGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTT 2030754 Query 169034 CATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCA 169093 || ||| ||| ||||| ||| | ||||| || || |||||| || ||||||||||| Sbjct 2030753 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCC 2030694 Query 169094 CTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGTTAC 169153 | ||||| ||| | | ||||| || || || || | |||||| || | |||||| Sbjct 2030693 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTAC 2030634 Query 169154 AAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGTAGA 169213 | ||||||||||| |||||||| |||||||| || || || ||||| || || || || Sbjct 2030633 AGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGA 2030574 Query 169214 TTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTG 169273 || |||||||| ||||| |||||||||||||| | | | || ||||||||||| | Sbjct 2030573 TTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCT 2030514 Query 169274 TTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACTTG 169333 | || || ||| || | ||||| || || | ||||| | || ||||| |||||| | Sbjct 2030513 TGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTA 2030454 Query 169334 AACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAA 169377 || || || || || |||||||| || || ||||| || | ||| Sbjct 2030453 AATGGTTTCAATTTCAACCAATCTGTAGTTGATGTCAAGGATAA 2030410 >seq404 Length=1096556 Score = 414 bits (458), Expect = 1e-110 Identities = 529/726 (73%), Gaps = 2/726 (0%) Strand=Plus/Minus Query 168749 GATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTAATCGGA 168808 ||||| |||||||| ||||| |||||||| || | | | | |||||| || | || Sbjct 544499 GATGAATGGTTATACAATGGCGGTCCTTATAAGCTAATTGTTCTACACTTCTTACTTGGT 544440 Query 168809 -ATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAGACTAGGTATGAGACCTTG 168867 || | | || || || | |||||||| | | | | | |||||| | ||||| Sbjct 544439 GATATATATATATATATATATA-AGTGGGAACTTAGTTTCCGTTTGGGTATGCGCCCTTG 544381 Query 168868 GATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCC 168927 ||| | |||| ||||||||||| || | | || ||| || ||| | | || || Sbjct 544380 GATTACTATTGCATATTCAGCACCTGTTGCAACTGCTACTGCTGTTTTCTTGATTTATCC 544321 Query 168928 ATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTT 168987 | |||||||||| || ||||||||||||||||||||||| ||||| || |||||||| Sbjct 544320 AATTGGTCAGGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTT 544261 Query 168988 CATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCATATGGCAGGAGT 169047 ||| | |||||||| || ||||||||||| |||||||| || || || ||| ||| || Sbjct 544260 TATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGT 544201 Query 169048 AGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCACTTGTAACATCTTC 169107 ||| ||| | ||||| || || |||||| || ||||||||||| | ||||| ||| Sbjct 544200 AGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAG 544141 Query 169108 TCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGTTACAAGTTCGGTCAAGA 169167 | | ||||| || || || || | |||||| || | ||||||| ||||||||||| Sbjct 544140 TTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGA 544081 Query 169168 AGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGTAGATTAATCTTCCAGTA 169227 |||||||| |||||||| || || || ||||| || || || |||| |||||||| || Sbjct 544080 GGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATA 544021 Query 169228 TGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTGTTCCCAGTTGTATG 169287 ||| |||||||||||||| | | | || ||||||||||| | | || | ||| | Sbjct 544020 TGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGAAGTAGG 543961 Query 169288 TGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACTTGAACGGATTTAACTT 169347 | | ||| | || || | ||||| | || ||||| |||||| | || || || || || Sbjct 543960 TATTTGGCTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTT 543901 Query 169348 TAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTACATGGGGTGACGTACTTAA 169407 |||||||| || || ||| | | ||| | ||| ||| |||| ||| | |||| Sbjct 543900 CAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAA 543841 Query 169408 CAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCACAACTTCCCACTAGA 169467 | | || ||||||||||||||||| |||||||| ||||| ||||| |||||||| ||||| Sbjct 543840 CCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGA 543781 Query 169468 CTTAGC 169473 | |||| Sbjct 543780 CCTAGC 543775 Score = 96.9 bits (106), Expect = 4e-15 Identities = 117/157 (75%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 168531 TTGGTTGGTTCGGTGTCTTAATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATT 168589 |||| ||||| ||||| || |||||||| |||||| || ||| | | ||| || ||| Sbjct 545933 TTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTC-TGTATTTATT 545875 Query 168590 GTTGCATTTATTGCTGCACCACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGT 168649 | || || |||||||| || || || ||||| || || || | |||||||| | || Sbjct 545874 ATCGCTTTCATTGCTGCCCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGA 545815 Query 168650 GCTCTAATGTATGGAAACAACATCATCTCAGGTGCAG 168686 ||||| | ||||||||||| || || || ||||||| Sbjct 545814 TCTCTACTTTATGGAAACAATATTATTTCTGGTGCAG 545778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564389022264960