Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq345 502 4e-137 seq43 432 5e-116 seq404 408 6e-109 >seq345 Length=1218342 Score = 502 bits (556), Expect = 4e-137 Identities = 644/888 (73%), Gaps = 0/888 (0%) Strand=Plus/Minus Query 215399 TTCATCGCTGCACCTCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTA 215458 ||||| ||||| ||||| || ||||| || || || | || || ||| || | ||| || Sbjct 658056 TTCATTGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTAGATCTCTA 657997 Query 215459 ATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTA 215518 | ||||| ||||| || || |||||||| || | |||| ||| | || || || || Sbjct 657996 CTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTACAGCTATAGGTTTG 657937 Query 215519 CACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCT 215578 || || ||||| || |||||||| ||| | ||||| |||||| | |||||||| || ||| Sbjct 657936 CATTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCT 657877 Query 215579 TTCCAACTGGTTATCTTCCACTTCCTCATTGGTATTTCTGCATACTGCGGAAGACAGTGG 215638 | | || || | | |||||| | ||||| | || ||| || | ||||| Sbjct 657876 TATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 657817 Query 215639 GAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTA 215698 |||||| || | | || |||||| | |||||||| |||||| || || || ||||| Sbjct 657816 GAACTTAGTTTCCGTTTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTT 657757 Query 215699 TCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCT 215758 | ||||| ||| || ||| | | |||||| | |||||||| || ||||||| | Sbjct 657756 GCAGCTGCTACTGCTGTTTTCTTGATTTATCCAATTGGTCAGGGAAGCTTTTCTGATGGT 657697 Query 215759 ATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAAC 215818 ||||| || ||||||||||| || ||||||| ||| |||| |||||||||||||||||| Sbjct 657696 ATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAAC 657637 Query 215819 ATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTC 215878 || || ||||||||||| ||||||||||| || |||||||| ||||| || || | ||| Sbjct 657636 ATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTC 657577 Query 215879 TCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAA 215938 ||| ||||| ||||| | || || ||| | | ||||| || || || || | ||| Sbjct 657576 AGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAA 657517 Query 215939 TCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCA 215998 ||| || | ||||||| ||||| |||||||| ||||| || || ||||||||||| Sbjct 657516 TCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCT 657457 Query 215999 CACGGTTACTTTGGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTT 216058 || ||||| ||||| || | ||||||||||| || || ||||||||| | | | Sbjct 657456 CATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTCCAACAACTCTCGTTTTTTG 657397 Query 216059 CACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCA 216118 || |||||| | || | || ||||| | |||| ||| | ||| | ||| | Sbjct 657396 CATTTCTTCTTAGCTACTTTGCCTGTAGTAGGTATTTGGTTCATTGCTTTAGGTATTAGC 657337 Query 216119 ACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGT 216178 ||||||| |||||||| || | |||||| |||||||| ||||| || || ||| Sbjct 657336 ACTATGGTTTTCAACCTAAATGATTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGT 657277 Query 216179 AAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATG 216238 | || ||| ||| ||||| || || ||||| | || |||||||||||||| ||| Sbjct 657276 CATGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATG 657217 Query 216239 CACGAGCGTAACGCTCACAACTTCCCATTAGACTTGGCTGCTGCTGAA 216286 || || ||||| ||||| |||||||| ||||| | ||||||| |||| Sbjct 657216 CATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCTGTTGAA 657169 >seq43 Length=3080068 Score = 432 bits (478), Expect = 5e-116 Identities = 547/752 (73%), Gaps = 0/752 (0%) Strand=Plus/Minus Query 215417 GTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATC 215476 || ||||| || || || | || || ||| |||| ||| || | ||||| ||||| || Sbjct 2031173 GTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATT 2031114 Query 215477 ATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGG 215536 || |||||||| || | |||| ||| || || || || || || ||||| || ||| Sbjct 2031113 ATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAATATGG 2031054 Query 215537 GAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTC 215596 ||||| ||| | ||||| |||||| | || ||||| | |||| | || || | || Sbjct 2031053 GAAGCGGCATCCGTTGATGAATGGTTATATAATGGCAGTCCTTATGAGCTAATTGTTTTA 2030994 Query 215597 CACTTCCTCATTGGTATTTCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTA 215656 |||||| | ||||| | || ||| || | ||||||||||| || | | | Sbjct 2030993 CACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTG 2030934 Query 215657 GGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTA 215716 |||||| | |||||||| |||||| || || || ||||| | ||||| ||| || Sbjct 2030933 GGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 2030874 Query 215717 TTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCT 215776 ||| | | |||||| | |||||||| || ||||||| |||||| || ||||||||| Sbjct 2030873 TTCTTGATTTATCCAATTGGTCAGGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCT 2030814 Query 215777 GGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTC 215836 || || ||||||| ||| |||| |||||||||||||||||||| || ||||||||||| Sbjct 2030813 GGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTT 2030754 Query 215837 CACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCA 215896 ||||||||||| || |||||||| ||||| || || | ||| ||| ||||| ||||| Sbjct 2030753 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCC 2030694 Query 215897 CTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTAC 215956 | || || ||| | | ||||| || || || || | |||||| || | |||||| Sbjct 2030693 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTAC 2030634 Query 215957 AAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGC 216016 | ||||| |||||||| ||||| || || ||||||||||| || ||||| ||||| || Sbjct 2030633 AGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGA 2030574 Query 216017 CTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCA 216076 | ||||||||||| || |||||||||||| | | | || |||||||| || || Sbjct 2030573 TTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCT 2030514 Query 216077 TTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTT 216136 | ||||| | |||| ||| ||||| | ||| | |||||||| |||||||| Sbjct 2030513 TGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTA 2030454 Query 216137 AACGGTTTCAACTTCAACCAGTCTGTCGTAGA 216168 || |||||||| |||||||| ||||| || || Sbjct 2030453 AATGGTTTCAATTTCAACCAATCTGTAGTTGA 2030422 >seq404 Length=1096556 Score = 408 bits (452), Expect = 6e-109 Identities = 532/733 (73%), Gaps = 2/733 (0%) Strand=Plus/Minus Query 215550 TTGACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTG 215609 |||| |||||| | |||||||| || |||| | || || | | |||||| | ||| Sbjct 544501 TTGATGAATGGTTATACAATGGCGGTCCTTATAAGCTAATTGTTCTACACTTCTTACTTG 544442 Query 215610 GT-ATTTCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCT 215668 || || | | ||| | | ||||||||||| || | | || |||||| | ||| Sbjct 544441 GTGATATATATATATATATATATA-AGTGGGAACTTAGTTTCCGTTTGGGTATGCGCCCT 544383 Query 215669 TGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTAT 215728 ||||| | |||| || || |||||||| | |||| ||| || ||| | | ||| Sbjct 544382 TGGATTACTATTGCATATTCAGCACCTGTTGCAACTGCTACTGCTGTTTTCTTGATTTAT 544323 Query 215729 CCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAAC 215788 ||| | |||||||| || ||||||| |||||| || ||||||||||| || |||||| Sbjct 544322 CCAATTGGTCAGGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAAC 544263 Query 215789 TACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGT 215848 | ||| |||| |||||||||||||||||||| || ||||||||||| ||||||||||| Sbjct 544262 TTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGC 544203 Query 215849 GTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCT 215908 || |||||||| ||||| || || | ||| ||| ||||| ||||| | || || ||| Sbjct 544202 GTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCT 544143 Query 215909 TCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAA 215968 | | ||||| || || || || | |||||| || | ||||||| ||||| ||| Sbjct 544142 AGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAA 544083 Query 215969 GAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAA 216028 ||||| ||||| || || ||||||||||| || ||||| ||||| || | ||||||||| Sbjct 544082 GAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAA 544023 Query 216029 TACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATT 216088 || || |||||||||||| | | | || |||||||| || || | |||| | Sbjct 544022 TATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGAAGTA 543963 Query 216089 TGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAAC 216148 |||| ||| ||||| | ||| | |||||||| |||||||| || |||||||| Sbjct 543962 GGTATTTGGCTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAAT 543903 Query 216149 TTCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTT 216208 |||||||| ||||| || || ||| || ||| ||| ||||| || || || Sbjct 543902 TTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATT 543843 Query 216209 AACAGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTA 216268 ||| | || |||||||||||||| ||||| || ||||| ||||| |||||||| || Sbjct 543842 AACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTA 543783 Query 216269 GACTTGGCTGCTG 216281 ||| | ||||||| Sbjct 543782 GACCTAGCTGCTG 543770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745012195648960