Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq345 504 8e-138 seq43 432 4e-116 seq404 405 6e-108 >seq345 Length=1218342 Score = 504 bits (558), Expect = 8e-138 Identities = 645/889 (73%), Gaps = 0/889 (0%) Strand=Plus/Minus Query 169793 CTTTCATCGCAGCTCCACCTGTGGACATCGATGGAATCAGAGAACCTGTAGCAGGTTCAT 169852 ||||||| || || || || || || || ||||| || | |||||||| | | || Sbjct 658058 CTTTCATTGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTAGATCTC 657999 Query 169853 TCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTC 169912 | | ||||| ||||| || || |||||||| || |||| |||| | || || ||| Sbjct 657998 TACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTACAGCTATAGGTT 657939 Query 169913 TCCACTTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTC 169972 | || || || || || |||||||| ||| | | ||||| ||||| || || || |||| Sbjct 657938 TGCATTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTC 657879 Query 169973 CTTATCAATTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATGGGTAGACAGT 170032 ||||| | || || | | |||||| | | || | || ||||||||| | ||| Sbjct 657878 CTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGT 657819 Query 170033 GGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAG 170092 ||||||| | |||||| |||||||| |||||||| ||| |||||||| ||||| | Sbjct 657818 GGGAACTTAGTTTCCGTTTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTG 657759 Query 170093 TGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACG 170152 | |||| || ||||| ||||| | ||||| | ||||||||| || || || | Sbjct 657758 TTGCAGCTGCTACTGCTGTTTTCTTGATTTATCCAATTGGTCAGGGAAGCTTTTCTGATG 657699 Query 170153 GAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACA 170212 | ||||||||||| ||||| ||||| || ||||| ||| | |||||||| || ||||||| Sbjct 657698 GTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACA 657639 Query 170213 ACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCT 170272 |||| |||||||||||||| || ||| ||| || |||||| | ||||| || | || | Sbjct 657638 ACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTAT 657579 Query 170273 TCTCAGCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACG 170332 || || ||||| ||||| | ||||| ||| | | ||||| || || ||||| || | Sbjct 657578 TCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATG 657519 Query 170333 AGTCACAGAACTATGGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAG 170392 | || || | || |||| |||||| ||||| |||||||| || || || || || | Sbjct 657518 AATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTG 657459 Query 170393 CACATGGATACTTTGGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTC 170452 | ||||| || ||||| || | ||||||||||||||||| | ||||| |||| | Sbjct 657458 CTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTCCAACAACTCTCGTTTTT 657399 Query 170453 TTCACTTCTTCCTTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTT 170512 | || |||||| | ||||| || ||||||||| | || ||||| | | | | |||||| Sbjct 657398 TGCATTTCTTCTTAGCTACTTTGCCTGTAGTAGGTATTTGGTTCATTGCTTTAGGTATTA 657339 Query 170513 GCACAATGGCATTTAACCTTAATGGATTTAACTTCAACCAGTCAATCGTAGATGGATCTG 170572 |||| |||| || ||||| |||| || || |||||||| || | || ||| | | Sbjct 657338 GCACTATGGTTTTCAACCTAAATGATTTCAATTTCAACCAATCTGTAGTTGATAGTCAAG 657279 Query 170573 GTAAAGTAGTTCCTACATGGGCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAA 170632 || | ||| || ||| ||||| || || ||||| | || ||||| ||||||||||| | Sbjct 657278 GTCATGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTA 657219 Query 170633 TGCATGAGCGTAATGCACACAACTTCCCACTTGACTTGGCAACTGCTGA 170681 ||||||| |||||||| || |||||||| || ||| | || ||| ||| Sbjct 657218 TGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCTGTTGA 657170 >seq43 Length=3080068 Score = 432 bits (478), Expect = 4e-116 Identities = 548/754 (73%), Gaps = 0/754 (0%) Strand=Plus/Minus Query 169813 GTGGACATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATC 169872 || || || ||||| || | |||||||| | || || | | ||||| ||||| || Sbjct 2031173 GTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATT 2031114 Query 169873 ATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGG 169932 || |||||||| || |||| |||| || || ||| | || || || || || ||| Sbjct 2031113 ATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAATATGG 2031054 Query 169933 GAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTC 169992 ||||| ||| | | ||||| ||||| ||||| || |||||||| | || || | || Sbjct 2031053 GAAGCGGCATCCGTTGATGAATGGTTATATAATGGCAGTCCTTATGAGCTAATTGTTTTA 2030994 Query 169993 CACTTCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTA 170052 |||||| | | || | || ||||||||| | |||||||||| | |||| | Sbjct 2030993 CACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTG 2030934 Query 170053 GGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTA 170112 |||||||| |||||||| ||| |||||||| ||||| || |||| || ||||| Sbjct 2030933 GGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 2030874 Query 170113 TTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCA 170172 ||||| | ||||| | ||||||||| || || || || ||||||||||| ||||| Sbjct 2030873 TTCTTGATTTATCCAATTGGTCAGGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCT 2030814 Query 170173 GGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTC 170232 ||||| || ||||| ||| | |||||||| || ||||||||||| |||||||||||||| Sbjct 2030813 GGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTT 2030754 Query 170233 CATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCA 170292 || ||| ||| || |||||| | ||||| || | || ||| || ||||| ||||| Sbjct 2030753 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCC 2030694 Query 170293 CTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATAC 170352 | ||||| ||| | | ||||| || || ||||| || || || || | || ||| Sbjct 2030693 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTAC 2030634 Query 170353 AAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGA 170412 | |||||| ||||| |||||||| || || || || || || ||||| || ||||| || Sbjct 2030633 AGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGA 2030574 Query 170413 CTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACA 170472 | ||||||||||||||||| || ||||| |||| | | || |||||||| ||| | Sbjct 2030573 TTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCT 2030514 Query 170473 TTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTT 170532 | ||||||||| | || ||||| ||| | | |||||| |||| ||||| || ||||| Sbjct 2030513 TGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTA 2030454 Query 170533 AATGGATTTAACTTCAACCAGTCAATCGTAGATG 170566 ||||| || || |||||||| || | || |||| Sbjct 2030453 AATGGTTTCAATTTCAACCAATCTGTAGTTGATG 2030420 >seq404 Length=1096556 Score = 405 bits (448), Expect = 6e-108 Identities = 524/721 (73%), Gaps = 2/721 (0%) Strand=Plus/Minus Query 169948 GATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTCCTTATCGGA 170007 ||||| ||||| || || || ||||||||| | || || | | |||||| | | || Sbjct 544499 GATGAATGGTTATACAATGGCGGTCCTTATAAGCTAATTGTTCTACACTTCTTACTTGGT 544440 Query 170008 -ATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTG 170066 || | | || || || | |||||||||| | |||||| |||||||| ||||| Sbjct 544439 GATATATATATATATATATATA-AGTGGGAACTTAGTTTCCGTTTGGGTATGCGCCCTTG 544381 Query 170067 GATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCC 170126 ||| | | |||||||| || || || || | || ||||| ||||| | ||||| Sbjct 544380 GATTACTATTGCATATTCAGCACCTGTTGCAACTGCTACTGCTGTTTTCTTGATTTATCC 544321 Query 170127 TTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTT 170186 | ||||||||| || || || || ||||||||||| ||||| ||||| || ||||| Sbjct 544320 AATTGGTCAGGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTT 544261 Query 170187 CATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATGGCAGGGGT 170246 ||| | |||||||| || ||||||||||| |||||||||||||| || ||| ||| || Sbjct 544260 TATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGT 544201 Query 170247 TGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTAACATCTTC 170306 |||||| | ||||| || | || ||| || ||||| ||||| | ||||| ||| Sbjct 544200 AGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAG 544141 Query 170307 TCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTCGGACAAGA 170366 | | ||||| || || ||||| || || || || | || |||| |||||| ||||| Sbjct 544140 TTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGA 544081 Query 170367 AGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATCTTCCAATA 170426 |||||||| || || || || || || ||||| || ||||| || | ||||||||||| Sbjct 544080 GGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATA 544021 Query 170427 TGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCTGTAGTATG 170486 |||||| || ||||| |||| | | || |||||||| ||| | | |||| |||| | Sbjct 544020 TGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGAAGTAGG 543961 Query 170487 CATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGATTTAACTT 170546 || ||| | ||| | | |||||| |||| ||||| || ||||| ||||| || || || Sbjct 543960 TATTTGGCTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTT 543901 Query 170547 CAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAGACGTTCTTAA 170606 |||||| || | || ||| | ||| ||| || ||| ||||| || || |||| Sbjct 543900 CAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAA 543841 Query 170607 CAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACTTCCCACTTGA 170666 | | || ||||| ||||||||||| |||||||| |||||||| || |||||||| || || Sbjct 543840 CCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGA 543781 Query 170667 C 170667 | Sbjct 543780 C 543780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582793707708800