Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq345 574 5e-159 seq43 518 4e-142 seq404 443 2e-119 seq1225 95.1 1e-14 seq565 89.7 6e-13 >seq345 Length=1218342 Score = 574 bits (636), Expect = 5e-159 Identities = 664/892 (74%), Gaps = 2/892 (0%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 ||||||||||| || |||||||| ||||| |||||||||||||| ||||| |||| Sbjct 657191 GGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTAATA 657250 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||||||||| | ||| | ||| ||||| || | | || ||||| || Sbjct 657251 ATATCAGCCCAGGTATTAATTACATGACCTTGACTATCAACTACAGATTGGTTGAAATTG 657310 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || |||| || || || |||| ||||||| ||| | |||| |||||||| || || Sbjct 657311 AAATCATTTAGGTTGAAAACCATAGTGCTAATACCTAAAGCAATGAACCAAATACCTACT 657370 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || ||| ||| ||| ||||| || || | | ||||| |||||| | |||||| ||| Sbjct 657371 ACAGGCAAAGTAGCTAAGAAGAAATGCAAAAAACGAGAGTTGTTGGAACTAGCATATTGG 657430 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | || || || || || |||||||| || |||||||||||||| || |||||| Sbjct 657431 AAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGA 657490 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 ||||| ||||||| | || || |||||||||| ||||| | ||| | | ||| Sbjct 657491 CCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAG 657550 Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404 || || | ||||||||||| ||| |||||| | || |||||||||||||| || || Sbjct 657551 GTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACGCCT 657610 Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464 ||||||||||| || |||||||||||||| || || |||||||| |||| ||| ||||| Sbjct 657611 AACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTG 657670 Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524 || || || ||||| || || ||||| |||||||| || || || || | ||||| Sbjct 657671 AAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCCTGACCAATTGGATAA 657730 Query 84525 ACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGA 84584 | | ||| ||||||| || |||||||| ||||| || || |||||| ||||| || Sbjct 657731 ATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGG 657790 Query 84585 CGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATC 84644 |||||||| | ||| | ||||||||| ||||||||||||||| | | |||||| Sbjct 657791 CGCATACCCAAACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGT 657850 Query 84645 AGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTT 84704 | |||||| | |||| || | |||||| || ||||| |||| |||||| || | | Sbjct 657851 AAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCATTCATCAACGGAT 657910 Query 84705 GCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCA 84764 || |||||||| || || || ||||| | ||| ||||| |||| | |||| | |||| Sbjct 657911 GCCGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCTGTAGAAGTAGGAATAATGGCA 657970 Query 84765 CCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCA 84824 |||||||| || |||||||| || | ||||| | || || || ||||| ||||| ||| Sbjct 657971 CCAGAAATAATATTGTTTCCATAAAGTAGAGATCTAGAAACAGGTTCACGAATACCATCA 658030 Query 84825 ATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCA 84875 ||||| ||||| || ||| ||| ||| | || || || ||||| ||| ||| Sbjct 658031 ATATCTACTGGAGGGGCAGCAATGAAAGAGATAATAAATACAGA-AGTTGCA 658081 >seq43 Length=3080068 Score = 518 bits (574), Expect = 4e-142 Identities = 559/740 (76%), Gaps = 0/740 (0%) Strand=Plus/Plus Query 84093 TGATTGAAGTTAAATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAAC 84152 || ||||| || || ||||| || || || ||||| ||||||| ||| | ||||| ||| Sbjct 2030434 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTGAAC 2030493 Query 84153 CAAATGCCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAG 84212 ||||| || || || ||||||||||| | ||| || || | ||||||| |||||||| Sbjct 2030494 CAAATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTGAAA 2030553 Query 84213 GAAGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTT 84272 |||||| |||||||| | || || || || || |||||||| || |||||||||||| Sbjct 2030554 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTT 2030613 Query 84273 TCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGG 84332 || || ||||||||||| ||||||| | || || |||||||||| ||||| | | Sbjct 2030614 TCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 2030673 Query 84333 ATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACA 84392 || | | ||| || || | ||||||||||| ||| |||||| | || ||||||||| Sbjct 2030674 ATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 2030733 Query 84393 CCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACA 84452 ||||| || || ||||||||||| || |||||||||||||| || || |||||||| ||| Sbjct 2030734 CCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACA 2030793 Query 84453 AGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGC 84512 | ||| ||||||| || || ||||| || || ||||| |||||||| || || || Sbjct 2030794 ATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCCTGA 2030853 Query 84513 CCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACA 84572 || | ||||| | | ||| ||||||| || |||||||| ||||| || || |||||| Sbjct 2030854 CCAATTGGATAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACA 2030913 Query 84573 CAGATCCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCA 84632 ||||| || |||||||| ||||| | ||||||||| ||||||||||||||| | Sbjct 2030914 GCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAA 2030973 Query 84633 AATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCAT 84692 | |||||| | |||||| || |||| || | |||||| | |||||||||| |||| Sbjct 2030974 GCTACACCAAGTAAGAAGTGTAAAACAATTAGCTCATAAGGACTGCCATTATATAACCAT 2031033 Query 84693 TCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGAT 84752 || || | ||| |||||||| || || || ||||| | ||| ||||| ||| | Sbjct 2031034 TCATCAACGGATGCCGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCCGCAGAAGTA 2031093 Query 84753 GGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCA 84812 |||| | |||||||||||| || |||||||| || | ||||| |||| || || ||| Sbjct 2031094 GGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCA 2031153 Query 84813 CGGATACCGTCAATATCAAC 84832 || ||||| |||||||| || Sbjct 2031154 CGAATACCATCAATATCTAC 2031173 >seq404 Length=1096556 Score = 443 bits (490), Expect = 2e-119 Identities = 528/714 (74%), Gaps = 2/714 (0%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 ||||||||||| || |||||||| ||||| |||||||||||||| ||||| |||| Sbjct 543787 GGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTAATA 543846 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||||||||| | ||||| ||| ||||| || | | || ||||| || Sbjct 543847 ATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACAGATTGGTTGAAATTG 543906 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || ||||| || || || ||||| ||||||| ||| | ||||| | |||||| || || Sbjct 543907 AAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTGAGCCAAATACCTACT 543966 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 | ||||||||||| | ||| || || | ||||||| |||||||| |||||| ||| Sbjct 543967 TCAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGG 544026 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | || || || || || |||||||| || |||||||||||||| || |||||| Sbjct 544027 AAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGA 544086 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 ||||| ||||||| | || || |||||||||| ||||| | ||| | | ||| Sbjct 544087 CCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAG 544146 Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404 || || | ||||||||||| ||| |||||| | || |||||||||||||| || || Sbjct 544147 GTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACGCCT 544206 Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464 ||||||||||| || |||||||||||||| || || |||||||| |||| ||| ||||| Sbjct 544207 AACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTG 544266 Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524 || || || ||||| || || ||||| |||||||| || || || || | ||||| Sbjct 544267 AAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCCTGACCAATTGGATAA 544326 Query 84525 ACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGA 84584 | | ||| ||||||| || | |||||| || || || || |||| | ||||| || Sbjct 544327 ATCAAGAAAACAGCAGTAGCAGTTGCAACAGGTGCTGAATATGCAATAGTAATCCAAGGG 544386 Query 84585 CGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAAT-GCACCAAT 84643 |||||||| | ||| | ||||||||| | | | || || | || |||||| Sbjct 544387 CGCATACCCAAACGGAAACTAAGTTCCCACTTA-TATATATATATATATATATCACCAAG 544445 Query 84644 CAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTC 84697 | |||||| | |||| || | |||||| || ||||| |||| |||||| || Sbjct 544446 TAAGAAGTGTAGAACAATTAGCTTATAAGGACCGCCATTGTATAACCATTCATC 544499 Score = 96.9 bits (106), Expect = 4e-15 Identities = 116/155 (75%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 84762 GCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCG 84821 ||||||||||| || |||||||| || | ||||| |||| || || ||||| ||||| Sbjct 545780 GCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACCA 545839 Query 84822 TCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCAGCAAG 84880 |||||||| || || || ||| ||| ||| || || || || ||||| ||| || | | Sbjct 545840 TCAATATCTACCGGAGGGGCAGCAATGAAAGCGATAATAAATACAGA-AGTTGCGGTCAA 545898 Query 84881 TAGAGTTGGAATCATAAGAGTTCCAAACCAACCAA 84915 || ||| || ||||| | | |||||||| |||| Sbjct 545899 TAAAGTAGGGATCATCAAAACACCAAACCATCCAA 545933 >seq1225 Length=211548 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 84123 GCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACCACTGGCCAAGCAGCCAAG 84182 ||||||||||||| | | | ||||| || |||| || || | |||||||||| ||| Sbjct 11017 GCCATGGTGCTAATAACTAAAGCAGTGAAATAAATACCCACTATATGCCAAGCAGCTAAG 11076 Query 84183 AAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGGAAGATAAGACGACCGAAG 84242 || || | | |||| || |||||||| |||||| | |||||| | || || || Sbjct 11077 AAGAAATATAAAGAATGAGAGTTGTTGAAACTAGCATATTAGAAGATCAATCGGCCAAAA 11136 Query 84243 TAGCCGTGAGCAGCAACAATATTATAAGTTTC 84274 || | || ||||| ||||||||||||||||| Sbjct 11137 TAACTATGTGCAGCTACAATATTATAAGTTTC 11168 >seq565 Length=806919 Score = 89.7 bits (98), Expect = 6e-13 Identities = 175/255 (69%), Gaps = 3/255 (1%) Strand=Plus/Plus Query 84582 GGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCA 84641 || |||||||| ||| || | |||||| || | ||||||||||||| | | ||||| Sbjct 488119 GGGCGCATACCTAGAAGAAAACTAAGTTCTCACTTACGACCCATGTAACAAGTTACACCA 488178 Query 84642 ATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATA 84701 | | | |||| | |||| |||| |||||| ||| |||| |||| |||||| | || Sbjct 488179 AATAAG-AGTGTATAACAATTAGTTCATAAGGACCATCATTGTATAACCATTCATTAATG 488237 Query 84702 CTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACT-AC 84760 | ||||| ||| || || || ||||| | | | ||| | |||| || || | | Sbjct 488238 GATATTGCTTTCCATATTGGGTAAAAATGCAAATCTATACCCGTAGA-AATATAAATAAT 488296 Query 84761 GGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACC 84820 | || ||||||| || | ||| | || | ||| | | | || | ||||| |||| Sbjct 488297 GACATCAGAAATAATACTATTTTCATAAAGTAGATATCTAAAAACAAGTTCACGAATACT 488356 Query 84821 GTCAATATCAACTGG 84835 |||||||||| ||| Sbjct 488357 ATCAATATCAATTGG 488371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571220385864160