Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq345 428 1e-115 seq43 379 6e-101 seq404 365 1e-96 >seq345 Length=1218342 Score = 428 bits (474), Expect = 1e-115 Identities = 624/879 (71%), Gaps = 2/879 (0%) Strand=Plus/Minus Query 25907 TTCATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTA 25966 ||||| || || || || |||||||| ||||| || ||||| || ||||| | || || Sbjct 658056 TTCATTGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTAGATCTCTA 657997 Query 25967 ATGTACGGAAACAATATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTA 26026 | || ||||||||||| || || || || | | || | |||| || || || | Sbjct 657996 CTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTACAGCTATAGGTTTG 657937 Query 26027 CATTTTTACCCGATCTGGGAAGCTGGCACAC-TGGACGAGTGGCTATACAATGGCGGACC 26085 ||||||||||| || |||||||| |||| | | || || ||| ||||||||||||| || Sbjct 657936 CATTTTTACCCAATATGGGAAGC-GGCATCCGTTGATGAATGGTTATACAATGGCGGTCC 657878 Query 26086 ATATCAACTCATTATCTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTG 26145 ||| | || ||| | | ||||||||| | || ||||| || || | |||| Sbjct 657877 TTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTG 657818 Query 26146 GGAACTATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACT 26205 |||||| || | | | || ||| | || ||||| |||||||||| |||| || | Sbjct 657817 GGAACTTAGTTTCCGTTTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGT 657758 Query 26206 ATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGG 26265 | || ||| || || ||||| ||||||| | || || || || ||| |||||| Sbjct 657757 TGCAGCTGCTACTGCTGTTTTCTTGATTTATCCAATTGGTCAGGGAAGCTTTTCTGATGG 657698 Query 26266 AATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAA 26325 |||||||| || |||||||||||||| ||||||||| | |||||||| || || || || Sbjct 657697 TATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAA 657638 Query 26326 TATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTT 26385 || || ||||||||||| || ||| || || ||||| || ||||| || | || || Sbjct 657637 CATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATT 657578 Query 26386 CGCTGCTATGCACGGAAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGT 26445 | ||||||||| || ||||| || || | || ||||| ||||| | | Sbjct 657577 CAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGA 657518 Query 26446 CTCACAGAATTATGGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGC 26505 || ||| | || || | || || ||||| ||||| || |||||||| || ||||| Sbjct 657517 ATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGC 657458 Query 26506 ACACGGGTACTTTGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCT 26565 || || || ||||| |||| || || || ||||| |||| || ||| |||| | | Sbjct 657457 TCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTCCAACAACTCTCGTTTTTT 657398 Query 26566 TCATTTCTTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTG 26625 |||||||| | ||||||| ||| || || || || ||| | | || | ||||| | Sbjct 657397 GCATTTCTTCTTAGCTACTTTGCCTGTAGTAGGTATTTGGTTCATTGCTTTAGGTATTAG 657338 Query 26626 CACAATGGCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGG 26685 ||| |||| || |||||||||| ||| || || ||||| || ||||| ||| | | || Sbjct 657337 CACTATGGTTTTCAACCTAAATGATTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGG 657278 Query 26686 AAAGATAATACCTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTAT 26745 | |||| ||| ||||||||| | | ||||| |||||||| || | |||||||| Sbjct 657277 TCATGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTAT 657218 Query 26746 GCACGAGCGTAATGCTCATAACTTTCCACTTGACTTAGC 26784 ||| || ||||||||||||||||| || || ||| |||| Sbjct 657217 GCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 657179 >seq43 Length=3080068 Score = 379 bits (420), Expect = 6e-101 Identities = 541/759 (71%), Gaps = 2/759 (0%) Strand=Plus/Minus Query 25925 GTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATA 25984 |||||||| ||||| || ||||| || ||||| || || || | || ||||||||||| Sbjct 2031173 GTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATT 2031114 Query 25985 ATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGG 26044 || || || || | | || | ||| || || || | ||||||||||| || ||| Sbjct 2031113 ATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAATATGG 2031054 Query 26045 GAAGCTGGCACAC-TGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTT 26103 ||||| |||| | | || || ||| |||| |||||| | || ||| | || ||| | || Sbjct 2031053 GAAGC-GGCATCCGTTGATGAATGGTTATATAATGGCAGTCCTTATGAGCTAATTGTTTT 2030995 Query 26104 CCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAGACT 26163 ||||||||| | || ||||| || || | |||||||||| || | | || Sbjct 2030994 ACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCT 2030935 Query 26164 AGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCAGT 26223 || ||| | || ||||| |||||||||| |||| || | | || ||| || || Sbjct 2030934 GGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT 2030875 Query 26224 GTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTC 26283 ||||| ||||||| | || || || || ||| |||||| |||||||| || ||||| Sbjct 2030874 TTTCTTGATTTATCCAATTGGTCAGGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTC 2030815 Query 26284 TGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCATT 26343 ||||||||| ||||||||| | |||||||| || || || || || || ||||||||||| Sbjct 2030814 TGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATT 2030755 Query 26344 CCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAG 26403 || ||| || || ||||| || ||||| || | || ||| ||||||||| || Sbjct 2030754 TCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTC 2030695 Query 26404 TTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGCTA 26463 ||||| || || | || ||||| ||||| | | || ||| | || || Sbjct 2030694 CTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTA 2030635 Query 26464 TAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAG 26523 | || || ||||| ||||| || |||||||| || ||||| || || || ||||| | Sbjct 2030634 CAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCG 2030575 Query 26524 ATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTAC 26583 ||| || || || ||||| ||||| || ||| |||||| | |||||||| || ||| | Sbjct 2030574 ATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGC 2030515 Query 26584 TTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCT 26643 |||||| || || || || ||| | || || | ||||| |||| ||||| || ||||| Sbjct 2030514 TTGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACCT 2030455 Query 26644 AAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAA 26682 ||||||||| || || ||||| || ||||| ||||| || Sbjct 2030454 AAATGGTTTCAATTTCAACCAATCTGTAGTTGATGTCAA 2030416 >seq404 Length=1096556 Score = 365 bits (404), Expect = 1e-96 Identities = 518/726 (71%), Gaps = 2/726 (0%) Strand=Plus/Minus Query 26060 GACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACTTCTTAATAGGA 26119 || || ||| ||||||||||||| || ||| | || ||| | | ||||||||| | || Sbjct 544499 GATGAATGGTTATACAATGGCGGTCCTTATAAGCTAATTGTTCTACACTTCTTACTTGGT 544440 Query 26120 G-TAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAGACTAGGAATGAGACCATG 26178 | || |||| | | | |||||||||| || | | | || ||| | || || Sbjct 544439 GATATATATATATATATATATA-AGTGGGAACTTAGTTTCCGTTTGGGTATGCGCCCTTG 544381 Query 26179 GATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCC 26238 ||| | |||||||| ||||||| | | | ||| || || ||||| ||||||| Sbjct 544380 GATTACTATTGCATATTCAGCACCTGTTGCAACTGCTACTGCTGTTTTCTTGATTTATCC 544321 Query 26239 TTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTT 26298 | || || || || ||| |||||| |||||||| || |||||||||||||| ||||| Sbjct 544320 AATTGGTCAGGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTT 544261 Query 26299 TATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCATTCCATATGGCTGGTGT 26358 |||| | |||||||| || || || || || || ||||||||||| || ||| || || Sbjct 544260 TATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGT 544201 Query 26359 TGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGTTTGGTTACTTCCTC 26418 ||||| || ||||| || | || ||| ||||||||| || ||||| || || Sbjct 544200 AGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAG 544141 Query 26419 ACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGCTATAAGTTTGGGCAAGA 26478 | || ||||| ||||| | | || ||| | || || | || || ||||| Sbjct 544140 TTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGA 544081 Query 26479 TGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAATTTTTCAGTA 26538 ||||| || |||||||| || ||||| || || || ||||| |||| || || || || Sbjct 544080 GGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATA 544021 Query 26539 TGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCCGGTTGTTGG 26598 ||| ||||| || ||| |||||| | |||||||| || ||| ||||||| | || || Sbjct 544020 TGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGAAGTAGG 543961 Query 26599 CATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGGTTTTAACTT 26658 || ||||| || || | ||||| |||| ||||| || |||||||||||||| || || Sbjct 543960 TATTTGGCTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTT 543901 Query 26659 TAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTACATGGGCTGATGTATTAAA 26718 ||||| || ||||| ||| | | || |||| ||| ||||||||| | | || Sbjct 543900 CAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAA 543841 Query 26719 CCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAACTTTCCACTTGA 26778 ||| |||||||| || | ||||||||||| || ||||||||||||||||| || || || Sbjct 543840 CCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGA 543781 Query 26779 CTTAGC 26784 | |||| Sbjct 543780 CCTAGC 543775 Score = 82.4 bits (90), Expect = 2e-11 Identities = 115/156 (74%), Gaps = 4/156 (3%) Strand=Plus/Minus Query 25844 GGATGGTTCGGGGTGCTTATGATACCCTGCTTACTCG-CAGCCACTACATGT-TTTATAC 25901 |||||||| || || | ||||| |||| ||| | | | || ||| | ||| ||||| Sbjct 545931 GGATGGTTTGGTGTTTTGATGAT-CCCTACTTTATTGACCGCAACTTC-TGTATTTATTA 545874 Query 25902 TTGCCTTCATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCT 25961 | || ||||| || || || || |||||||| ||||| || ||||| || ||||| || | Sbjct 545873 TCGCTTTCATTGCTGCCCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGAT 545814 Query 25962 CGTTAATGTACGGAAACAATATAATATCAGGAGCAG 25997 | || | || ||||||||||| || || || |||| Sbjct 545813 CTCTACTTTATGGAAACAATATTATTTCTGGTGCAG 545778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146713415814048