Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq345 459 8e-125 seq43 417 2e-112 seq404 360 6e-95 >seq345 Length=1218342 Score = 459 bits (508), Expect = 8e-125 Identities = 636/886 (72%), Gaps = 6/886 (1%) Strand=Plus/Plus Query 35964 TCAGCAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 36023 ||| |||| |||||||| || |||||||| || || ||||| ||||||||||||||||| Sbjct 657170 TCAACAGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATA 657229 Query 36024 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCA 36083 || | || |||||||||| ||| |||||||| || | || || | |||| Sbjct 657230 CCAAGGTTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACATGACCTTGACTATCA 657289 Query 36084 ACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATA 36143 || || || || ||||| || || | || || || ||| |||||||| | || | | Sbjct 657290 ACTACAGATTGGTTGAAATTGAAATCATTTAGGTTGAAAACCATAGTGCTAATACCTAAA 657349 Query 36144 GCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTA 36203 || | | ||| || | || ||| ||| ||| | ||||||||| ||| || Sbjct 657350 GCAATGAACCAAATACCTACTACAGGCAAAGTAGCTAAGAAGAAATGCAAAAAACGAGAG 657409 Query 36204 TTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 36263 || || | |||||||| |||||||| | || ||||| || |||||||| || || || Sbjct 657410 TTGTTGGAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATA 657469 Query 36264 TTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTT 36323 ||||| || ||||| ||||| |||||| | || || | || ||||||| | || Sbjct 657470 TTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTG 657529 Query 36324 GTTTCACGAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCT 36380 ||||| | || || | |||| || |||| || ||||||||| ||||| | Sbjct 657530 GTTTCCCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAG 657586 Query 36381 CCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCT 36440 || |||||||| || || || || | ||| || || || ||||||||||| ||||| || Sbjct 657587 CCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCA 657646 Query 36441 GCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAG 36500 ||||| || |||| |||||| |||||||| || || || || ||||||||||||||||| Sbjct 657647 GCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAA 657706 Query 36501 AAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCT 36560 || || || || |||| || || | ||||| |||||| || ||||||||||| ||| Sbjct 657707 AAGCTTCCCTGACCAATTGGATAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCT 657766 Query 36561 GAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGT 36620 ||||| || ||| ||||| || | |||||| | | ||||||||||||| | || Sbjct 657767 GAATATGCAACAGCAATCCAAGGGCGCATACCCAAACGGAAACTAAGTTCCCACTCACGA 657826 Query 36621 CCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCG 36680 |||| |||| | | ||||| | ||||| | ||||| || | ||| || || || Sbjct 657827 CCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCA 657886 Query 36681 TTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATT 36740 || |||||||| || || | || ||| |||||||| |||||||| || || | ||| || Sbjct 657887 TTGTATAACCATTCATCAACGGATGCCGCTTCCCATATTGGGTAAAAATGCAAACCTATA 657946 Query 36741 GCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCT 36800 || | || | || | || || ||||| || || ||||||||||| |||| | || Sbjct 657947 GCTGTAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCTA 658006 Query 36801 GAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAA 36846 || ||||| |||||||||||||| ||||| || ||||| ||||||| Sbjct 658007 GAAACAGGTTCACGAATACCATCAATATCTACTGGAGGGGCAGCAA 658052 >seq43 Length=3080068 Score = 417 bits (462), Expect = 2e-112 Identities = 549/756 (73%), Gaps = 6/756 (1%) Strand=Plus/Plus Query 36080 ATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCC 36139 |||||| || || || ||||| || || || || || || |||||||||||| | || Sbjct 2030421 ATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACC 2030480 Query 36140 CATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCG 36199 | ||| || | ||| || | || ||||||||||| ||||||||||||||| || Sbjct 2030481 TAAAGCAGTGAACCAAATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACG 2030540 Query 36200 GCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAAC 36259 || || || |||||||| |||||||| | || ||||| || |||||||| || || Sbjct 2030541 AGAGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTAC 2030600 Query 36260 AATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCC 36319 || ||||| || ||||| ||||| |||||| | || || | || ||||||| | Sbjct 2030601 GATATTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTC 2030660 Query 36320 AGTTGTTTCACGAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAA 36376 || ||||| | || || | |||| || |||| || ||||||||| ||||| Sbjct 2030661 TGTGGTTTCCCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAG 2030717 Query 36377 AGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTG 36436 | || |||||||| || || || || | ||| || || || ||||||||||| ||||| Sbjct 2030718 GGAGCCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTG 2030777 Query 36437 TTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATC 36496 || ||||| || |||| |||||| |||||||| || || || || |||||||||||||| Sbjct 2030778 CTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATC 2030837 Query 36497 AGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGG 36556 ||| || || || || |||| || || | ||||| |||||| || ||||||||||| Sbjct 2030838 AGAAAAGCTTCCCTGACCAATTGGATAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGG 2030897 Query 36557 GGCTGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTG 36616 |||||||| || ||| ||||| || | |||||| || | ||||||||||||| | Sbjct 2030898 AGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTC 2030957 Query 36617 TCGTCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCC 36676 || |||| |||| | | ||||| | ||||| || ||||| || | ||| || | Sbjct 2030958 ACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAAAACAATTAGCTCATAAGGACT 2031017 Query 36677 TCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACC 36736 || ||||||||||| || || | || ||| |||||||| |||||||| || || | ||| Sbjct 2031018 GCCATTATATAACCATTCATCAACGGATGCCGCTTCCCATATTGGGTAAAAATGCAAACC 2031077 Query 36737 GATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGC 36796 || || || | || | || || ||||| || || ||||||||||| |||| | Sbjct 2031078 TATAGCCGCAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAGAGA 2031137 Query 36797 TCCTGAGACAGGCTCACGAATACCATCTATATCCAC 36832 ||| || ||||| |||||||||||||| ||||| || Sbjct 2031138 TCCAGAAACAGGTTCACGAATACCATCAATATCTAC 2031173 >seq404 Length=1096556 Score = 360 bits (398), Expect = 6e-95 Identities = 472/649 (73%), Gaps = 6/649 (1%) Strand=Plus/Plus Query 35968 CAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTA 36027 |||| |||||||| || |||||||| || || ||||| ||||||||||||||||| || | Sbjct 543770 CAGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAA 543829 Query 36028 AGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGA 36087 || |||||||||| ||| |||||||| || | || | || | |||||| | Sbjct 543830 GGTTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTA 543889 Query 36088 CTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGG 36147 | || || ||||| || || || || || || |||||||||||| | || | ||| | Sbjct 543890 CAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAG 543949 Query 36148 TAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTAT 36207 | ||||| || | | ||||||||||| ||||||||||||||| || || | Sbjct 543950 TGAGCCAAATACCTACTTCAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGT 544009 Query 36208 TAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTAT 36267 | || |||||||| |||||||| | || ||||| || |||||||| || || || |||| Sbjct 544010 TGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTAT 544069 Query 36268 ACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTT 36327 | || ||||| ||||| |||||| | || || | || ||||||| | || |||| Sbjct 544070 AAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTT 544129 Query 36328 CACGAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCAC 36384 | | || || | |||| || |||| || ||||||||| ||||| | || | Sbjct 544130 CCCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAGCCGC 544186 Query 36385 CGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCT 36444 ||||||| || || || || | ||| || || || ||||||||||| ||||| || |||| Sbjct 544187 CGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCT 544246 Query 36445 GAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAAC 36504 | || |||| |||||| |||||||| || || || || ||||||||||||||||| || | Sbjct 544247 GGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGC 544306 Query 36505 TCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAAT 36564 | || || |||| || || | ||||| |||||| || | ||||||||| ||||||| Sbjct 544307 TTCCCTGACCAATTGGATAAATCAAGAAAACAGCAGTAGCAGTTGCAACAGGTGCTGAAT 544366 Query 36565 AAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCA 36613 | || | | ||||| || | |||||| | | ||||||||||||| Sbjct 544367 ATGCAATAGTAATCCAAGGGCGCATACCCAAACGGAAACTAAGTTCCCA 544415 Score = 105 bits (116), Expect = 2e-18 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 36761 TGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACC 36820 ||| ||||| || || ||||||||||| |||| | ||| || ||||| ||||||||||| Sbjct 545779 TGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACC 545838 Query 36821 ATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAA 36880 ||| ||||| || ||||| ||||||| || || || | |||| | | ||| || || Sbjct 545839 ATCAATATCTACCGGAGGGGCAGCAATGAAAGCGATAATAAATACAGAAGTTGCGGTCAA 545898 Query 36881 AAGTGCAGGGATCATTAGTACCCCAAACCACCC 36913 | | ||||||||| | || |||||||| || Sbjct 545899 TAAAGTAGGGATCATCAAAACACCAAACCATCC 545931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150441085914008