Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq345 482 7e-132 seq43 403 5e-108 seq404 394 3e-105 >seq345 Length=1218342 Score = 482 bits (534), Expect = 7e-132 Identities = 658/914 (72%), Gaps = 6/914 (1%) Strand=Plus/Plus Query 5186 TCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATA 5245 ||| |||| ||||| || || |||||||| |||||||| ||||| ||||| ||||||||| Sbjct 657170 TCAACAGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATA 657229 Query 5246 CCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCA 5305 |||||||| |||||||| | | ||| ||||| || || | ||| | ||| Sbjct 657230 CCAAGGTTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACATGACCTTGACTATCA 657289 Query 5306 ACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATA 5365 || || || || ||||| || || | || || || ||| |||||||| || || | | Sbjct 657290 ACTACAGATTGGTTGAAATTGAAATCATTTAGGTTGAAAACCATAGTGCTAATACCTAAA 657349 Query 5366 GAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTA 5425 | | | ||| || | || || ||| ||||||| | ||||||||| ||| ||| Sbjct 657350 GCAATGAACCAAATACCTACTACAGGCAAAGTAGCTAAGAAGAAATGCAAAAAACGAGAG 657409 Query 5426 TTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 5485 ||||| | |||||||| |||||||| | || ||||| || |||||||| || || || Sbjct 657410 TTGTTGGAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATA 657469 Query 5486 TTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTT 5545 ||||| |||||||||||||| |||||| | || || | || ||| | | || Sbjct 657470 TTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTG 657529 Query 5546 GTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCA 5605 ||||| | || | ||| || || | |||||||||||| ||| | | || Sbjct 657530 GTTTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCG 657589 Query 5606 CCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCC 5665 |||||||| ||||| || || | |||||| || || ||||||||||| ||||| || ||| Sbjct 657590 CCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCC 657649 Query 5666 TGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAA 5725 |||||||| | ||||||||| |||||||||||||| || ||||||||||||||| || Sbjct 657650 TGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAG 657709 Query 5726 CTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGA 5784 |||||||| || | || || | || || || | |||| || || ||||| || ||||| Sbjct 657710 CTTCCCTGACCAATTGGATAAATCAAGAAAACAGCAGTA-GCAGCTGCAACAGGAGCTGA 657768 Query 5785 ATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCC 5844 |||||| || |||||| || ||||| || || | | ||||||||||||| | || || Sbjct 657769 ATATGCAACAGCAATCCAAGGGCGCATACCCAAACGGAAACTAAGTTCCCACTCACGACC 657828 Query 5845 CAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATT 5904 || |||| || | ||||| | |||||| | || | || | || || || ||||| Sbjct 657829 CATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATT 657888 Query 5905 GTAAAGCCATTCATCGA--GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATT 5962 ||| | ||||||||| | ||| || |||||||| || || || || || || || || Sbjct 657889 GTATAACCATTCATCAACGGAT--GCCGCTTCCCATATTGGGTAAAAATGCAAACCTATA 657946 Query 5963 GCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCT 6022 || | || | || | || ||| || || || || ||||||||||| |||||||||| Sbjct 657947 GCTGTAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCTA 658006 Query 6023 GCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATA 6082 | || |||||||| || || || || || ||||| || ||||| | ||| | | ||| Sbjct 658007 GAAACAGGTTCACGAATACCATCAATATCTACTGGAGGGGCAGCAATGAAAGAGATAATA 658066 Query 6083 AATGCAGTAGTTGC 6096 ||| ||| |||||| Sbjct 658067 AATACAGAAGTTGC 658080 Score = 80.6 bits (88), Expect = 8e-11 Identities = 98/134 (73%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 6044 TCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAG 6103 || || || || || || ||||| | ||| || | |||||| ||| ||||||||| || Sbjct 658086 TCAATATCTACCGGAGGGGCAGCAATGAAAGCGATAATAAATACAGAAGTTGCGGTCAAT 658145 Query 6104 AGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTGTTGGTGCTAGTA 6163 | | || ||||| || ||||||||||| || | || || ||||| | ||||| || Sbjct 658146 AAAGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTGGTT 658205 Query 6164 ACCCAGTCACAGAA 6177 | ||||| |||||| Sbjct 658206 ATCCAGTTACAGAA 658219 >seq43 Length=3080068 Score = 403 bits (446), Expect = 5e-108 Identities = 545/755 (72%), Gaps = 6/755 (1%) Strand=Plus/Plus Query 5303 TCAACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCC 5362 ||||| || || || ||||| || || || || || || |||||||||||| || || Sbjct 2030422 TCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCT 2030481 Query 5363 ATAGAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGG 5422 | || || | ||| || | || || ||||||| ||| ||||||||||||||| ||| Sbjct 2030482 AAAGCAGTGAACCAAATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGA 2030541 Query 5423 CTATTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACA 5482 ||||| || |||||||| |||||||| | || ||||| || |||||||| || || Sbjct 2030542 GAGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACG 2030601 Query 5483 ATGTTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCA 5542 || ||||| |||||||||||||| |||||| | || || | || ||| | | Sbjct 2030602 ATATTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCT 2030661 Query 5543 GTTGTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCT 5602 || ||||| | || | ||| || || | |||||||||||| ||| | | Sbjct 2030662 GTGGTTTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAG 2030721 Query 5603 CCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCT 5662 || |||||||| ||||| || || | |||||| || || ||||||||||| ||||| || Sbjct 2030722 CCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCA 2030781 Query 5663 GCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTG 5722 ||||||||||| | ||||||||| |||||||||||||| || ||||||||||||||| Sbjct 2030782 GCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAA 2030841 Query 5723 AAACTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGC 5781 || |||||||| || | || || | || || || | |||| || || ||||| || || Sbjct 2030842 AAGCTTCCCTGACCAATTGGATAAATCAAGAAAACAGCAGTA-GCAGCTGCAACAGGAGC 2030900 Query 5782 TGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCG 5841 ||||||||| || |||||| || ||||| || | | | ||||||||||||| | || Sbjct 2030901 TGAATATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACG 2030960 Query 5842 TCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCC 5901 |||| |||| || | ||||| | |||||| || || | || | || || | || Sbjct 2030961 ACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAAAACAATTAGCTCATAAGGACTGCC 2031020 Query 5902 ATTGTAAAGCCATTCATCGA--GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCA 5959 ||| || | ||||||||| | ||| || |||||||| || || || || || || || Sbjct 2031021 ATTATATAACCATTCATCAACGGAT--GCCGCTTCCCATATTGGGTAAAAATGCAAACCT 2031078 Query 5960 ATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGAT 6019 || || || | || | || ||| || || || || ||||||||||| ||||||||| Sbjct 2031079 ATAGCCGCAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAGAGAT 2031138 Query 6020 CCTGCGACGGGTTCACGTATGCCGTCGATGTCGAC 6054 || | || |||||||| || || || || || || Sbjct 2031139 CCAGAAACAGGTTCACGAATACCATCAATATCTAC 2031173 >seq404 Length=1096556 Score = 394 bits (436), Expect = 3e-105 Identities = 477/647 (74%), Gaps = 2/647 (0%) Strand=Plus/Plus Query 5190 CAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAA 5249 |||| ||||| || || |||||||| |||||||| ||||| ||||| ||||||||||||| Sbjct 543770 CAGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAA 543829 Query 5250 GGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGA 5309 |||| |||||||| | | ||| ||||| || || | | ||| | ||||| | Sbjct 543830 GGTTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTA 543889 Query 5310 CTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGG 5369 | || || ||||| || || || || || || |||||||||||| || || | || | Sbjct 543890 CAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAG 543949 Query 5370 TAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGT 5429 | ||||| || | || | ||||||| ||| ||||||||||||||| ||| |||| Sbjct 543950 TGAGCCAAATACCTACTTCAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGT 544009 Query 5430 TAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTAT 5489 | || |||||||| |||||||| | || ||||| || |||||||| || || || |||| Sbjct 544010 TGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTAT 544069 Query 5490 ACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTT 5549 | |||||||||||||| |||||| | || || | || ||| | | || |||| Sbjct 544070 AAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTT 544129 Query 5550 CACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGA 5609 | | || | ||| || || | |||||||||||| ||| | | || |||| Sbjct 544130 CCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGA 544189 Query 5610 ATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGA 5669 |||| ||||| || || | |||||| || || ||||||||||| ||||| || ||||||| Sbjct 544190 ATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGA 544249 Query 5670 ATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTC 5729 |||| | ||||||||| |||||||||||||| || ||||||||||||||| || |||| Sbjct 544250 ATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTC 544309 Query 5730 CCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATAT 5788 |||| || | || || | || || || | |||| || | ||||| |||||||||||| Sbjct 544310 CCTGACCAATTGGATAAATCAAGAAAACAGCAGTA-GCAGTTGCAACAGGTGCTGAATAT 544368 Query 5789 GCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCA 5835 || | |||||| || ||||| || || | | ||||||||||||| Sbjct 544369 GCAATAGTAATCCAAGGGCGCATACCCAAACGGAAACTAAGTTCCCA 544415 Score = 107 bits (118), Expect = 6e-19 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 5984 GCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCG 6043 || || || || || ||||||||||| ||||||||||| | || |||||||| || || Sbjct 545780 GCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACCA 545839 Query 6044 TCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAG 6103 || || || || || || ||||| | ||| || | |||||| ||| ||||||||| || Sbjct 545840 TCAATATCTACCGGAGGGGCAGCAATGAAAGCGATAATAAATACAGAAGTTGCGGTCAAT 545899 Query 6104 AGTGCGGGTATCATTAAGACACCAAACCACCC 6135 | | || ||||| || ||||||||||| || Sbjct 545900 AAAGTAGGGATCATCAAAACACCAAACCATCC 545931 Score = 84.2 bits (92), Expect = 7e-12 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 6034 ACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGT 6093 ||| || || || || || || || || ||||| | ||| || | |||||| ||| ||| Sbjct 545938 ACGAATACCATCAATATCTACCGGAGGGGCAGCAATGAAAGCGATAATAAATACAGAAGT 545997 Query 6094 TGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTGTT 6153 |||||| || | | || ||||| || ||||||||||| || | || || ||||| | Sbjct 545998 TGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTC 546057 Query 6154 GGTGCTAGTAACCCAGTCACAGAA 6177 ||||| || | ||||| |||||| Sbjct 546058 AGTGCTGGTTATCCAGTTACAGAA 546081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152636091655272