Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01]
7,452 sequences; 1,373,365,927 total letters
Query= NC_016658.1
Length=47741
Score E
Sequences producing significant alignments: (Bits) Value
seq345 482 7e-132
seq43 403 5e-108
seq404 394 3e-105
>seq345
Length=1218342
Score = 482 bits (534), Expect = 7e-132
Identities = 658/914 (72%), Gaps = 6/914 (1%)
Strand=Plus/Plus
Query 5186 TCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATA 5245
||| |||| ||||| || || |||||||| |||||||| ||||| ||||| |||||||||
Sbjct 657170 TCAACAGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATA 657229
Query 5246 CCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCA 5305
|||||||| |||||||| | | ||| ||||| || || | ||| | |||
Sbjct 657230 CCAAGGTTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACATGACCTTGACTATCA 657289
Query 5306 ACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATA 5365
|| || || || ||||| || || | || || || ||| |||||||| || || | |
Sbjct 657290 ACTACAGATTGGTTGAAATTGAAATCATTTAGGTTGAAAACCATAGTGCTAATACCTAAA 657349
Query 5366 GAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTA 5425
| | | ||| || | || || ||| ||||||| | ||||||||| ||| |||
Sbjct 657350 GCAATGAACCAAATACCTACTACAGGCAAAGTAGCTAAGAAGAAATGCAAAAAACGAGAG 657409
Query 5426 TTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 5485
||||| | |||||||| |||||||| | || ||||| || |||||||| || || ||
Sbjct 657410 TTGTTGGAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATA 657469
Query 5486 TTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTT 5545
||||| |||||||||||||| |||||| | || || | || ||| | | ||
Sbjct 657470 TTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTG 657529
Query 5546 GTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCA 5605
||||| | || | ||| || || | |||||||||||| ||| | | ||
Sbjct 657530 GTTTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCG 657589
Query 5606 CCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCC 5665
|||||||| ||||| || || | |||||| || || ||||||||||| ||||| || |||
Sbjct 657590 CCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCC 657649
Query 5666 TGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAA 5725
|||||||| | ||||||||| |||||||||||||| || ||||||||||||||| ||
Sbjct 657650 TGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAG 657709
Query 5726 CTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGA 5784
|||||||| || | || || | || || || | |||| || || ||||| || |||||
Sbjct 657710 CTTCCCTGACCAATTGGATAAATCAAGAAAACAGCAGTA-GCAGCTGCAACAGGAGCTGA 657768
Query 5785 ATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCC 5844
|||||| || |||||| || ||||| || || | | ||||||||||||| | || ||
Sbjct 657769 ATATGCAACAGCAATCCAAGGGCGCATACCCAAACGGAAACTAAGTTCCCACTCACGACC 657828
Query 5845 CAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATT 5904
|| |||| || | ||||| | |||||| | || | || | || || || |||||
Sbjct 657829 CATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATT 657888
Query 5905 GTAAAGCCATTCATCGA--GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATT 5962
||| | ||||||||| | ||| || |||||||| || || || || || || || ||
Sbjct 657889 GTATAACCATTCATCAACGGAT--GCCGCTTCCCATATTGGGTAAAAATGCAAACCTATA 657946
Query 5963 GCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCT 6022
|| | || | || | || ||| || || || || ||||||||||| ||||||||||
Sbjct 657947 GCTGTAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCTA 658006
Query 6023 GCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATA 6082
| || |||||||| || || || || || ||||| || ||||| | ||| | | |||
Sbjct 658007 GAAACAGGTTCACGAATACCATCAATATCTACTGGAGGGGCAGCAATGAAAGAGATAATA 658066
Query 6083 AATGCAGTAGTTGC 6096
||| ||| ||||||
Sbjct 658067 AATACAGAAGTTGC 658080
Score = 80.6 bits (88), Expect = 8e-11
Identities = 98/134 (73%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 6044 TCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAG 6103
|| || || || || || ||||| | ||| || | |||||| ||| ||||||||| ||
Sbjct 658086 TCAATATCTACCGGAGGGGCAGCAATGAAAGCGATAATAAATACAGAAGTTGCGGTCAAT 658145
Query 6104 AGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTGTTGGTGCTAGTA 6163
| | || ||||| || ||||||||||| || | || || ||||| | ||||| ||
Sbjct 658146 AAAGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTGGTT 658205
Query 6164 ACCCAGTCACAGAA 6177
| ||||| ||||||
Sbjct 658206 ATCCAGTTACAGAA 658219
>seq43
Length=3080068
Score = 403 bits (446), Expect = 5e-108
Identities = 545/755 (72%), Gaps = 6/755 (1%)
Strand=Plus/Plus
Query 5303 TCAACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCC 5362
||||| || || || ||||| || || || || || || |||||||||||| || ||
Sbjct 2030422 TCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCT 2030481
Query 5363 ATAGAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGG 5422
| || || | ||| || | || || ||||||| ||| ||||||||||||||| |||
Sbjct 2030482 AAAGCAGTGAACCAAATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGA 2030541
Query 5423 CTATTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACA 5482
||||| || |||||||| |||||||| | || ||||| || |||||||| || ||
Sbjct 2030542 GAGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACG 2030601
Query 5483 ATGTTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCA 5542
|| ||||| |||||||||||||| |||||| | || || | || ||| | |
Sbjct 2030602 ATATTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCT 2030661
Query 5543 GTTGTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCT 5602
|| ||||| | || | ||| || || | |||||||||||| ||| | |
Sbjct 2030662 GTGGTTTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAG 2030721
Query 5603 CCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCT 5662
|| |||||||| ||||| || || | |||||| || || ||||||||||| ||||| ||
Sbjct 2030722 CCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCA 2030781
Query 5663 GCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTG 5722
||||||||||| | ||||||||| |||||||||||||| || |||||||||||||||
Sbjct 2030782 GCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAA 2030841
Query 5723 AAACTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGC 5781
|| |||||||| || | || || | || || || | |||| || || ||||| || ||
Sbjct 2030842 AAGCTTCCCTGACCAATTGGATAAATCAAGAAAACAGCAGTA-GCAGCTGCAACAGGAGC 2030900
Query 5782 TGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCG 5841
||||||||| || |||||| || ||||| || | | | ||||||||||||| | ||
Sbjct 2030901 TGAATATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACG 2030960
Query 5842 TCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCC 5901
|||| |||| || | ||||| | |||||| || || | || | || || | ||
Sbjct 2030961 ACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAAAACAATTAGCTCATAAGGACTGCC 2031020
Query 5902 ATTGTAAAGCCATTCATCGA--GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCA 5959
||| || | ||||||||| | ||| || |||||||| || || || || || || ||
Sbjct 2031021 ATTATATAACCATTCATCAACGGAT--GCCGCTTCCCATATTGGGTAAAAATGCAAACCT 2031078
Query 5960 ATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGAT 6019
|| || || | || | || ||| || || || || ||||||||||| |||||||||
Sbjct 2031079 ATAGCCGCAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAGAGAT 2031138
Query 6020 CCTGCGACGGGTTCACGTATGCCGTCGATGTCGAC 6054
|| | || |||||||| || || || || || ||
Sbjct 2031139 CCAGAAACAGGTTCACGAATACCATCAATATCTAC 2031173
>seq404
Length=1096556
Score = 394 bits (436), Expect = 3e-105
Identities = 477/647 (74%), Gaps = 2/647 (0%)
Strand=Plus/Plus
Query 5190 CAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAA 5249
|||| ||||| || || |||||||| |||||||| ||||| ||||| |||||||||||||
Sbjct 543770 CAGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAA 543829
Query 5250 GGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGA 5309
|||| |||||||| | | ||| ||||| || || | | ||| | ||||| |
Sbjct 543830 GGTTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTA 543889
Query 5310 CTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGG 5369
| || || ||||| || || || || || || |||||||||||| || || | || |
Sbjct 543890 CAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAG 543949
Query 5370 TAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGT 5429
| ||||| || | || | ||||||| ||| ||||||||||||||| ||| ||||
Sbjct 543950 TGAGCCAAATACCTACTTCAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGT 544009
Query 5430 TAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTAT 5489
| || |||||||| |||||||| | || ||||| || |||||||| || || || ||||
Sbjct 544010 TGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTAT 544069
Query 5490 ACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTT 5549
| |||||||||||||| |||||| | || || | || ||| | | || ||||
Sbjct 544070 AAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTT 544129
Query 5550 CACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGA 5609
| | || | ||| || || | |||||||||||| ||| | | || ||||
Sbjct 544130 CCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGA 544189
Query 5610 ATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGA 5669
|||| ||||| || || | |||||| || || ||||||||||| ||||| || |||||||
Sbjct 544190 ATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGA 544249
Query 5670 ATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTC 5729
|||| | ||||||||| |||||||||||||| || ||||||||||||||| || ||||
Sbjct 544250 ATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTC 544309
Query 5730 CCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATAT 5788
|||| || | || || | || || || | |||| || | ||||| ||||||||||||
Sbjct 544310 CCTGACCAATTGGATAAATCAAGAAAACAGCAGTA-GCAGTTGCAACAGGTGCTGAATAT 544368
Query 5789 GCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCA 5835
|| | |||||| || ||||| || || | | |||||||||||||
Sbjct 544369 GCAATAGTAATCCAAGGGCGCATACCCAAACGGAAACTAAGTTCCCA 544415
Score = 107 bits (118), Expect = 6e-19
Identities = 115/152 (76%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 5984 GCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCG 6043
|| || || || || ||||||||||| ||||||||||| | || |||||||| || ||
Sbjct 545780 GCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACCA 545839
Query 6044 TCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAG 6103
|| || || || || || ||||| | ||| || | |||||| ||| ||||||||| ||
Sbjct 545840 TCAATATCTACCGGAGGGGCAGCAATGAAAGCGATAATAAATACAGAAGTTGCGGTCAAT 545899
Query 6104 AGTGCGGGTATCATTAAGACACCAAACCACCC 6135
| | || ||||| || ||||||||||| ||
Sbjct 545900 AAAGTAGGGATCATCAAAACACCAAACCATCC 545931
Score = 84.2 bits (92), Expect = 7e-12
Identities = 105/144 (73%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 6034 ACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGT 6093
||| || || || || || || || || ||||| | ||| || | |||||| ||| |||
Sbjct 545938 ACGAATACCATCAATATCTACCGGAGGGGCAGCAATGAAAGCGATAATAAATACAGAAGT 545997
Query 6094 TGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTGTT 6153
|||||| || | | || ||||| || ||||||||||| || | || || ||||| |
Sbjct 545998 TGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTC 546057
Query 6154 GGTGCTAGTAACCCAGTCACAGAA 6177
||||| || | ||||| ||||||
Sbjct 546058 AGTGCTGGTTATCCAGTTACAGAA 546081
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 152636091655272
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |