Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq345 441 2e-119 seq43 405 2e-108 seq404 356 7e-94 >seq345 Length=1218342 Score = 441 bits (488), Expect = 2e-119 Identities = 632/886 (71%), Gaps = 6/886 (1%) Strand=Plus/Plus Query 25444 TCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 25503 ||| ||| |||| ||| ||||||||||| || || ||||| ||||||||||||||||| Sbjct 657170 TCAACAGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATA 657229 Query 25504 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCA 25563 || | || |||||||||| ||| |||||||| || | || || | |||| Sbjct 657230 CCAAGGTTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACATGACCTTGACTATCA 657289 Query 25564 ACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATA 25623 || || || || ||||| || || | || || || ||| |||||||| | || | | Sbjct 657290 ACTACAGATTGGTTGAAATTGAAATCATTTAGGTTGAAAACCATAGTGCTAATACCTAAA 657349 Query 25624 GCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTA 25683 || | | ||| || | || ||| ||| ||| | ||||||||| ||| ||| Sbjct 657350 GCAATGAACCAAATACCTACTACAGGCAAAGTAGCTAAGAAGAAATGCAAAAAACGAGAG 657409 Query 25684 TTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 25743 || || | |||||||| |||||||| | || ||||| || |||||||| || || || Sbjct 657410 TTGTTGGAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATA 657469 Query 25744 TTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTT 25803 ||||| || ||||| ||||| |||||| | || || | || ||||||| | || Sbjct 657470 TTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTG 657529 Query 25804 GTTTCACGAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCT 25860 ||||| | || || | |||| || |||| || ||||||||| ||||| | Sbjct 657530 GTTTCCCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAG 657586 Query 25861 CCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCT 25920 || |||||||| || || || || | ||| || || || ||||||||||| ||||| || Sbjct 657587 CCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCA 657646 Query 25921 GCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAG 25980 ||||| || |||| |||||| |||||||| || || || || ||||||||||||||||| Sbjct 657647 GCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAA 657706 Query 25981 AAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCT 26040 || || || || |||| || || | ||||| |||||| || ||||||||||| ||| Sbjct 657707 AAGCTTCCCTGACCAATTGGATAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCT 657766 Query 26041 GAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGT 26100 ||||| || ||| ||||| || | ||| || | | ||||||||||||| | || Sbjct 657767 GAATATGCAACAGCAATCCAAGGGCGCATACCCAAACGGAAACTAAGTTCCCACTCACGA 657826 Query 26101 CCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCG 26160 |||| |||| | | || | | ||||| | ||||| || | ||| || || || Sbjct 657827 CCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCA 657886 Query 26161 TTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATT 26220 || || ||||| || || | || ||| |||||||| |||||||| || || | ||| || Sbjct 657887 TTGTATAACCATTCATCAACGGATGCCGCTTCCCATATTGGGTAAAAATGCAAACCTATA 657946 Query 26221 GCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCT 26280 || |||| | || | || || || || || || ||||||||||| |||| | || Sbjct 657947 GCTGTAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCTA 658006 Query 26281 GAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAA 26326 || ||||| |||||||||||||| ||||| || ||||| ||||||| Sbjct 658007 GAAACAGGTTCACGAATACCATCAATATCTACTGGAGGGGCAGCAA 658052 >seq43 Length=3080068 Score = 405 bits (448), Expect = 2e-108 Identities = 546/756 (72%), Gaps = 6/756 (1%) Strand=Plus/Plus Query 25560 ATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCC 25619 |||||| || || || ||||| || || || || || || |||||||||||| | || Sbjct 2030421 ATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACC 2030480 Query 25620 CATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACG 25679 | ||| || | ||| || | || ||||||||||| ||||||||||||||| ||| Sbjct 2030481 TAAAGCAGTGAACCAAATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACG 2030540 Query 25680 GCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAAC 25739 || || || |||||||| |||||||| | || ||||| || |||||||| || || Sbjct 2030541 AGAGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTAC 2030600 Query 25740 AATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCC 25799 || ||||| || ||||| ||||| |||||| | || || | || ||||||| | Sbjct 2030601 GATATTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTC 2030660 Query 25800 AGTTGTTTCACGAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAA 25856 || ||||| | || || | |||| || |||| || ||||||||| ||||| Sbjct 2030661 TGTGGTTTCCCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAG 2030717 Query 25857 AGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTG 25916 | || |||||||| || || || || | ||| || || || ||||||||||| ||||| Sbjct 2030718 GGAGCCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTG 2030777 Query 25917 TTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATC 25976 || ||||| || |||| |||||| |||||||| || || || || |||||||||||||| Sbjct 2030778 CTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATC 2030837 Query 25977 AGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGG 26036 ||| || || || || |||| || || | ||||| |||||| || ||||||||||| Sbjct 2030838 AGAAAAGCTTCCCTGACCAATTGGATAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGG 2030897 Query 26037 GGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTG 26096 |||||||| || ||| ||||| || | ||| || || | ||||||||||||| | Sbjct 2030898 AGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTC 2030957 Query 26097 TCGTCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCC 26156 || |||| |||| | | || | | ||||| || ||||| || | ||| || | Sbjct 2030958 ACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAAAACAATTAGCTCATAAGGACT 2031017 Query 26157 ACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACC 26216 || ||||| ||||| || || | || ||| |||||||| |||||||| || || | ||| Sbjct 2031018 GCCATTATATAACCATTCATCAACGGATGCCGCTTCCCATATTGGGTAAAAATGCAAACC 2031077 Query 26217 GATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGC 26276 || || ||| | || | || || || || || || ||||||||||| |||| | Sbjct 2031078 TATAGCCGCAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAGAGA 2031137 Query 26277 TCCTGAGACAGGCTCACGAATACCATCTATATCCAC 26312 ||| || ||||| |||||||||||||| ||||| || Sbjct 2031138 TCCAGAAACAGGTTCACGAATACCATCAATATCTAC 2031173 >seq404 Length=1096556 Score = 356 bits (394), Expect = 7e-94 Identities = 468/644 (73%), Gaps = 6/644 (1%) Strand=Plus/Plus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| ||||||||||| || || ||||| ||||||||||||||||| || | || Sbjct 543775 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 543834 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 |||||||||| ||| |||||||| || | || | || | |||||| || || Sbjct 543835 GCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACAGAT 543894 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || ||||| || || || || || || |||||||||||| | || | ||| || ||| Sbjct 543895 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTGAGC 543954 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || || | | ||||||||||| ||||||||||||||| ||| || || || Sbjct 543955 CAAATACCTACTTCAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTGAAA 544014 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 |||||||| |||||||| | || ||||| || |||||||| || || || ||||| || Sbjct 544015 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTT 544074 Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 25812 ||||| ||||| |||||| | || || | || ||||||| | || ||||| | Sbjct 544075 TCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 544134 Query 25813 AT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAAT 25869 || || | |||| || |||| || ||||||||| ||||| | || |||||| Sbjct 544135 ATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAGCCGCCGAAT 544191 Query 25870 ACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAG 25929 || || || || || | ||| || || || ||||||||||| ||||| || ||||| || Sbjct 544192 ACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAAT 544251 Query 25930 ACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCT 25989 |||| |||||| |||||||| || || || || ||||||||||||||||| || || || Sbjct 544252 ACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCC 544311 Query 25990 TGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCT 26049 || |||| || || | ||||| |||||| || | ||||||||| |||||||| || Sbjct 544312 TGACCAATTGGATAAATCAAGAAAACAGCAGTAGCAGTTGCAACAGGTGCTGAATATGCA 544371 Query 26050 ACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCA 26093 | | ||||| || | ||| || | | ||||||||||||| Sbjct 544372 ATAGTAATCCAAGGGCGCATACCCAAACGGAAACTAAGTTCCCA 544415 Score = 100 bits (110), Expect = 9e-17 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 26241 TGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACC 26300 ||| || || || || ||||||||||| |||| | ||| || ||||| ||||||||||| Sbjct 545779 TGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACC 545838 Query 26301 ATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAA 26360 ||| ||||| || ||||| ||||||| || || || | |||| | | ||| || || Sbjct 545839 ATCAATATCTACCGGAGGGGCAGCAATGAAAGCGATAATAAATACAGAAGTTGCGGTCAA 545898 Query 26361 AAGTGCAGGGATCATTAGTACCCCAAACCACCC 26393 | | ||||||||| | || |||||||| || Sbjct 545899 TAAAGTAGGGATCATCAAAACACCAAACCATCC 545931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151980149706352