Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq1752 113 5e-20 >seq1752 Length=70440 Score = 113 bits (124), Expect = 5e-20 Identities = 350/531 (66%), Gaps = 17/531 (3%) Strand=Plus/Plus Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 ||||| || || ||||| || || || ||||||| ||||| || || || || ||| Sbjct 24529 AAACACGCGAAGTCACAGTGCAAGCCCTCATCTCGCGAGATCAACTCGTTTGAGAATGTT 24588 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGAT-CCAGAAAA 37291 ||||| ||||| || || | || || | ||||||||| || ||||||| | |||||||| Sbjct 24589 AATCCCGGCATCAAGCCACGCTTCTTTAGCCAAAATATCGC-GCAAAAGCTTCCAGAAAA 24647 Query 37292 GAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTAC-CGAAAGTTGAACTAT-AA 37349 || || || || || ||||| || | || | | | | | ||||| || || Sbjct 24648 AAATATTCCCTCCACACAGGCAAAAGCGATCAGCC-TCTCCGCAAAAGT----CTCCGAA 24702 Query 37350 TCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTA---ACACATTCAATTGTTTCA 37406 || ||||| | | ||| || || ||| ||| ||||| | || ||| Sbjct 24703 CCATCGATCCACCTGAGGGCCCACTCAGCTTTT---TTAGCCACACAAGGGACAGTCTCA 24759 Query 37407 ATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAA 37466 ||||| | || | || || || | |||| | |||||||| || | | | | Sbjct 24760 ATTGCATGAAACAAGCGATTCTTCTCGTTGGAATCTTTAATATAAGTCTCCAACAAAAGA 24819 Query 37467 CTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCT 37526 || ||||| || || || |||||||||||||| || || || ||||| ||| | ||| Sbjct 24820 CTGTACATCTCGGAATGGATATTTTCAATAGCGATTTGGAATCCATAGAAAGCACGAGCC 24879 Query 37527 TCAGATAATTGAACATCGTT-AAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATC 37585 |||| | || || || || | ||||| || ||| | |||||| ||| || ||||| Sbjct 24880 TCAGCAACCTGGACTTCCTTCATAAAACGTC-CAGCGAGGTTTTCGAGAACGATACCATC 24938 Query 37586 ACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTT 37645 || |||||||| |||||||||| | | ||| || ||||||| || || Sbjct 24939 GGAGGCGGCAAAGAATGCAAGAACATGGGTGACAAAGTGCTTTTCATCGGGTGTTAGGGC 24998 Query 37646 TTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 || ||| | | ||||| || | ||| || || ||| | |||||||| Sbjct 24999 TTCCCAGTGGCGGAGATCTTGAGAGAGATCGACCTCCTCAGCAGTCCAAAA 25049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592261625690080