Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq345 540 1e-148 seq43 464 7e-126 seq404 435 3e-117 seq51 82.4 8e-11 >seq345 Length=1218342 Score = 540 bits (598), Expect = 1e-148 Identities = 652/887 (74%), Gaps = 0/887 (0%) Strand=Plus/Minus Query 162604 TTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTT 162663 |||||||| || |||||||| ||||| |||||||| | ||||||||| | | || || Sbjct 658056 TTCATTGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTAGATCTCTA 657997 Query 162664 CTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTT 162723 || ||||| ||||| || || |||||||| | |||||| ||| | ||||| ||| | Sbjct 657996 CTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTACAGCTATAGGTTTG 657937 Query 162724 CACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCT 162783 || || || || || |||||||| ||| | ||||||| ||||| || ||||| || ||| Sbjct 657936 CATTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCT 657877 Query 162784 TTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGG 162843 | | || | || | |||||| | | || | | ||| |||||| ||||| Sbjct 657876 TATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 657817 Query 162844 GAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTA 162903 |||||| || ||| || |||||||| |||||||| ||||||||| || || || || Sbjct 657816 GAACTTAGTTTCCGTTTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTT 657757 Query 162904 TCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCA 162963 | || || ||||| |||||| | ||||| | ||||| || || ||||| | Sbjct 657756 GCAGCTGCTACTGCTGTTTTCTTGATTTATCCAATTGGTCAGGGAAGCTTTTCTGATGGT 657697 Query 162964 ATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAAC 163023 |||||||| || || ||||||||||| |||| ||| | || ||||| || ||||||||| Sbjct 657696 ATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAAC 657637 Query 163024 ATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTT 163083 ||||| |||||||| || || ||| | || || || ||||||||||| || || || || Sbjct 657636 ATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTC 657577 Query 163084 AGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAG 163143 ||||||||||| ||||| | || || ||| | | ||||| ||||| || || | || Sbjct 657576 AGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAA 657517 Query 163144 TCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCT 163203 || || | ||||| | ||||| ||||| ||||| ||||| || || || |||||| Sbjct 657516 TCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCT 657457 Query 163204 CATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTT 163263 ||||| || ||||| || ||||||||||| ||||| || ||||||||| |||| | Sbjct 657456 CATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTCCAACAACTCTCGTTTTTTG 657397 Query 163264 CACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCA 163323 || |||||| | ||| | || ||||| || | || ||||||| ||| | ||| | Sbjct 657396 CATTTCTTCTTAGCTACTTTGCCTGTAGTAGGTATTTGGTTCATTGCTTTAGGTATTAGC 657337 Query 163324 ACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGACGCAGGTGGT 163383 ||||||| |||||||| || | |||||| ||||||||||| || ||||| ||| Sbjct 657336 ACTATGGTTTTCAACCTAAATGATTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGT 657277 Query 163384 AAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATG 163443 | || ||| ||| ||||| ||||| ||||| | || |||||||||||||||||| Sbjct 657276 CATGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATG 657217 Query 163444 CACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTGCTGA 163490 || || ||||||||||| |||||||| || ||||| ||||||| ||| Sbjct 657216 CATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCTGTTGA 657170 >seq43 Length=3080068 Score = 464 bits (514), Expect = 7e-126 Identities = 554/752 (74%), Gaps = 0/752 (0%) Strand=Plus/Minus Query 162622 GTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATC 162681 || ||||| |||||||| | ||||||||| | || || || || ||||| ||||| || Sbjct 2031173 GTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATT 2031114 Query 162682 ATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGG 162741 || |||||||| | |||||| ||| ||||| ||| | || || || || || ||| Sbjct 2031113 ATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAATATGG 2031054 Query 162742 GAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTC 162801 ||||| ||| | ||||||| ||||| |||||||| | |||| | || | || || Sbjct 2031053 GAAGCGGCATCCGTTGATGAATGGTTATATAATGGCAGTCCTTATGAGCTAATTGTTTTA 2030994 Query 162802 CACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGCTTA 162861 |||||| | | || | | ||| |||||| ||||||||||| || ||| | Sbjct 2030993 CACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTG 2030934 Query 162862 GGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTG 162921 |||||||| |||||||| ||||||||| || || || || | || || ||||| Sbjct 2030933 GGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 2030874 Query 162922 TTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCT 162981 |||||| | ||||| | ||||| || || ||||| | |||||||| || || ||| Sbjct 2030873 TTCTTGATTTATCCAATTGGTCAGGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCT 2030814 Query 162982 GGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTC 163041 |||||||| |||| ||| | || ||||| || |||||||||||||| |||||||| || Sbjct 2030813 GGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTT 2030754 Query 163042 CATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCT 163101 || ||| | || || || ||||||||||| || || || || ||||||||||| ||||| Sbjct 2030753 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCC 2030694 Query 163102 CTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTAT 163161 | || || ||| | | ||||| ||||| || || | || || || | ||||| Sbjct 2030693 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTAC 2030634 Query 163162 AAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGC 163221 | ||||| ||||| ||||| ||||| || || || ||||||||||| || ||||| || Sbjct 2030633 AGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGA 2030574 Query 163222 TTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCA 163281 ||||||||||| ||||| |||||||||||| ||||| | || |||||||| ||||| Sbjct 2030573 TTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCT 2030514 Query 163282 TTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTT 163341 | ||||| || | || ||||||||||| | ||| | |||||||| |||||||| Sbjct 2030513 TGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTA 2030454 Query 163342 AACGGTTTCAACTTCAACCAATCCGTCGTTGA 163373 || |||||||| ||||||||||| || ||||| Sbjct 2030453 AATGGTTTCAATTTCAACCAATCTGTAGTTGA 2030422 >seq404 Length=1096556 Score = 435 bits (482), Expect = 3e-117 Identities = 488/651 (75%), Gaps = 6/651 (1%) Strand=Plus/Minus Query 162839 AGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCAC 162898 ||||||||||| || ||| || |||||||| |||||||| | ||||||| || |||| Sbjct 544417 AGTGGGAACTTAGTTTCCGTTTGGGTATGCGCCCTTGGATTACTATTGCATATTCAGCAC 544358 Query 162899 CAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTG 162958 | || | | || ||||| |||||| | ||||| | ||||| || || |||| Sbjct 544357 CTGTTGCAACTGCTACTGCTGTTTTCTTGATTTATCCAATTGGTCAGGGAAGCTTTTCTG 544298 Query 162959 ACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGC 163018 | | |||||||| || || ||||||||||| |||| ||| | || ||||| || |||| Sbjct 544297 ATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGC 544238 Query 163019 ACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCAC 163078 |||||||||| |||||||| || || ||| | || || || ||||||||||| || || | Sbjct 544237 ACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCC 544178 Query 163079 TCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGC 163138 | || ||||||||||| ||||| | || || ||| | | ||||| ||||| || || Sbjct 544177 TATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAA 544118 Query 163139 AAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTG 163198 | || || || | ||||| | ||||| ||||| ||||| ||||| || || || | Sbjct 544117 ATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAG 544058 Query 163199 CTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTT 163258 |||||||||| || ||||| || ||||||||||| ||||| |||||||||||| |||| Sbjct 544057 CTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTT 543998 Query 163259 CACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTG 163318 | | || |||||||| ||||| | |||| || | || ||| ||||||| | ||| Sbjct 543997 CTTTACATTTCTTCCTAGCTGCTTGGCCTGAAGTAGGTATTTGGCTCACTGCTTTAGGTA 543938 Query 163319 TGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA---CG 163375 | |||||||| |||||||| || |||||||| ||||||||||| || ||||| Sbjct 543937 TTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTC 543878 Query 163376 CAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGG 163435 |||| || || ||| ||| ||||| ||||| ||||| | || |||||||||| Sbjct 543877 AAGGTCGT---GTAATTAATACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGG 543821 Query 163436 AAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTG 163486 |||||||||| || ||||||||||| |||||||| || ||||| ||||||| Sbjct 543820 AAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCTG 543770 Score = 98.7 bits (108), Expect = 1e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 162541 GGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATT 162600 || ||||| ||||| |||||||||||| || | | ||| | || || || || Sbjct 545931 GGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATC 545872 Query 162601 GCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCA 162660 || |||||||| || ||||| || ||||| |||||||| | ||||||||| | || || Sbjct 545871 GCTTTCATTGCTGCCCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 545812 Query 162661 CTTCTCTATGGTAACAACATCATCTCTGGTGC 162692 || || ||||| ||||| || || |||||||| Sbjct 545811 CTACTTTATGGAAACAATATTATTTCTGGTGC 545780 >seq51 Length=2912257 Score = 82.4 bits (90), Expect = 8e-11 Identities = 126/177 (71%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 163063 GTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTT-GTTACTTCTTCTCTTAT 163121 |||| | | || || | || ||||||||||| |||| |||| || |||||| | | || Sbjct 983419 GTATCCAGCGGCTCCTTATTCAGTGCTATGCATGGTT-TCTTAGTAACTTCTAATTTGAT 983361 Query 163122 CAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGA 163181 ||||||||| | | | || || || | |||| || |||| ||||| |||| Sbjct 983360 CAGAGAAACCATAAAAAATGAATCTACTAATGAATGTTACAAATTCGATCAAGAGAAAGA 983301 Query 163182 GACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGC 163238 | ||| || | ||| ||||||||||| || |||| | | ||||||||| | ||||| Sbjct 983300 AATTTATAATAATGTAGCTGCTCATGGTTATTTTGATAGATTGATCTTCTAATATGC 983244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553033280150880