Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01]
7,452 sequences; 1,373,365,927 total letters
Query= NC_019443.1
Length=172879
Score E
Sequences producing significant alignments: (Bits) Value
seq345 540 1e-148
seq43 464 7e-126
seq404 435 3e-117
seq51 82.4 8e-11
>seq345
Length=1218342
Score = 540 bits (598), Expect = 1e-148
Identities = 652/887 (74%), Gaps = 0/887 (0%)
Strand=Plus/Minus
Query 162604 TTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTT 162663
|||||||| || |||||||| ||||| |||||||| | ||||||||| | | || ||
Sbjct 658056 TTCATTGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTAGATCTCTA 657997
Query 162664 CTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTT 162723
|| ||||| ||||| || || |||||||| | |||||| ||| | ||||| ||| |
Sbjct 657996 CTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTACAGCTATAGGTTTG 657937
Query 162724 CACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCT 162783
|| || || || || |||||||| ||| | ||||||| ||||| || ||||| || |||
Sbjct 657936 CATTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCT 657877
Query 162784 TTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGG 162843
| | || | || | |||||| | | || | | ||| |||||| |||||
Sbjct 657876 TATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 657817
Query 162844 GAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTA 162903
|||||| || ||| || |||||||| |||||||| ||||||||| || || || ||
Sbjct 657816 GAACTTAGTTTCCGTTTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTT 657757
Query 162904 TCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCA 162963
| || || ||||| |||||| | ||||| | ||||| || || ||||| |
Sbjct 657756 GCAGCTGCTACTGCTGTTTTCTTGATTTATCCAATTGGTCAGGGAAGCTTTTCTGATGGT 657697
Query 162964 ATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAAC 163023
|||||||| || || ||||||||||| |||| ||| | || ||||| || |||||||||
Sbjct 657696 ATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAAC 657637
Query 163024 ATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTT 163083
||||| |||||||| || || ||| | || || || ||||||||||| || || || ||
Sbjct 657636 ATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTC 657577
Query 163084 AGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAG 163143
||||||||||| ||||| | || || ||| | | ||||| ||||| || || | ||
Sbjct 657576 AGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAA 657517
Query 163144 TCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCT 163203
|| || | ||||| | ||||| ||||| ||||| ||||| || || || ||||||
Sbjct 657516 TCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCT 657457
Query 163204 CATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTT 163263
||||| || ||||| || ||||||||||| ||||| || ||||||||| |||| |
Sbjct 657456 CATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTCCAACAACTCTCGTTTTTTG 657397
Query 163264 CACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCA 163323
|| |||||| | ||| | || ||||| || | || ||||||| ||| | ||| |
Sbjct 657396 CATTTCTTCTTAGCTACTTTGCCTGTAGTAGGTATTTGGTTCATTGCTTTAGGTATTAGC 657337
Query 163324 ACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGACGCAGGTGGT 163383
||||||| |||||||| || | |||||| ||||||||||| || ||||| |||
Sbjct 657336 ACTATGGTTTTCAACCTAAATGATTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGT 657277
Query 163384 AAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATG 163443
| || ||| ||| ||||| ||||| ||||| | || ||||||||||||||||||
Sbjct 657276 CATGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATG 657217
Query 163444 CACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTGCTGA 163490
|| || ||||||||||| |||||||| || ||||| ||||||| |||
Sbjct 657216 CATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCTGTTGA 657170
>seq43
Length=3080068
Score = 464 bits (514), Expect = 7e-126
Identities = 554/752 (74%), Gaps = 0/752 (0%)
Strand=Plus/Minus
Query 162622 GTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATC 162681
|| ||||| |||||||| | ||||||||| | || || || || ||||| ||||| ||
Sbjct 2031173 GTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATT 2031114
Query 162682 ATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGG 162741
|| |||||||| | |||||| ||| ||||| ||| | || || || || || |||
Sbjct 2031113 ATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAATATGG 2031054
Query 162742 GAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTC 162801
||||| ||| | ||||||| ||||| |||||||| | |||| | || | || ||
Sbjct 2031053 GAAGCGGCATCCGTTGATGAATGGTTATATAATGGCAGTCCTTATGAGCTAATTGTTTTA 2030994
Query 162802 CACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGCTTA 162861
|||||| | | || | | ||| |||||| ||||||||||| || ||| |
Sbjct 2030993 CACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTG 2030934
Query 162862 GGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTG 162921
|||||||| |||||||| ||||||||| || || || || | || || |||||
Sbjct 2030933 GGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 2030874
Query 162922 TTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCT 162981
|||||| | ||||| | ||||| || || ||||| | |||||||| || || |||
Sbjct 2030873 TTCTTGATTTATCCAATTGGTCAGGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCT 2030814
Query 162982 GGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTC 163041
|||||||| |||| ||| | || ||||| || |||||||||||||| |||||||| ||
Sbjct 2030813 GGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTT 2030754
Query 163042 CATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCT 163101
|| ||| | || || || ||||||||||| || || || || ||||||||||| |||||
Sbjct 2030753 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCC 2030694
Query 163102 CTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTAT 163161
| || || ||| | | ||||| ||||| || || | || || || | |||||
Sbjct 2030693 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTAC 2030634
Query 163162 AAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGC 163221
| ||||| ||||| ||||| ||||| || || || ||||||||||| || ||||| ||
Sbjct 2030633 AGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGA 2030574
Query 163222 TTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCA 163281
||||||||||| ||||| |||||||||||| ||||| | || |||||||| |||||
Sbjct 2030573 TTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCT 2030514
Query 163282 TTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTT 163341
| ||||| || | || ||||||||||| | ||| | |||||||| ||||||||
Sbjct 2030513 TGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTA 2030454
Query 163342 AACGGTTTCAACTTCAACCAATCCGTCGTTGA 163373
|| |||||||| ||||||||||| || |||||
Sbjct 2030453 AATGGTTTCAATTTCAACCAATCTGTAGTTGA 2030422
>seq404
Length=1096556
Score = 435 bits (482), Expect = 3e-117
Identities = 488/651 (75%), Gaps = 6/651 (1%)
Strand=Plus/Minus
Query 162839 AGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCAC 162898
||||||||||| || ||| || |||||||| |||||||| | ||||||| || ||||
Sbjct 544417 AGTGGGAACTTAGTTTCCGTTTGGGTATGCGCCCTTGGATTACTATTGCATATTCAGCAC 544358
Query 162899 CAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTG 162958
| || | | || ||||| |||||| | ||||| | ||||| || || ||||
Sbjct 544357 CTGTTGCAACTGCTACTGCTGTTTTCTTGATTTATCCAATTGGTCAGGGAAGCTTTTCTG 544298
Query 162959 ACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGC 163018
| | |||||||| || || ||||||||||| |||| ||| | || ||||| || ||||
Sbjct 544297 ATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGC 544238
Query 163019 ACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCAC 163078
|||||||||| |||||||| || || ||| | || || || ||||||||||| || || |
Sbjct 544237 ACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCC 544178
Query 163079 TCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGC 163138
| || ||||||||||| ||||| | || || ||| | | ||||| ||||| || ||
Sbjct 544177 TATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAA 544118
Query 163139 AAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTG 163198
| || || || | ||||| | ||||| ||||| ||||| ||||| || || || |
Sbjct 544117 ATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAG 544058
Query 163199 CTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTT 163258
|||||||||| || ||||| || ||||||||||| ||||| |||||||||||| ||||
Sbjct 544057 CTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTT 543998
Query 163259 CACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTG 163318
| | || |||||||| ||||| | |||| || | || ||| ||||||| | |||
Sbjct 543997 CTTTACATTTCTTCCTAGCTGCTTGGCCTGAAGTAGGTATTTGGCTCACTGCTTTAGGTA 543938
Query 163319 TGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA---CG 163375
| |||||||| |||||||| || |||||||| ||||||||||| || |||||
Sbjct 543937 TTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTC 543878
Query 163376 CAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGG 163435
|||| || || ||| ||| ||||| ||||| ||||| | || ||||||||||
Sbjct 543877 AAGGTCGT---GTAATTAATACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGG 543821
Query 163436 AAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTG 163486
|||||||||| || ||||||||||| |||||||| || ||||| |||||||
Sbjct 543820 AAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCTG 543770
Score = 98.7 bits (108), Expect = 1e-15
Identities = 113/152 (74%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 162541 GGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATT 162600
|| ||||| ||||| |||||||||||| || | | ||| | || || || ||
Sbjct 545931 GGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATC 545872
Query 162601 GCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCA 162660
|| |||||||| || ||||| || ||||| |||||||| | ||||||||| | || ||
Sbjct 545871 GCTTTCATTGCTGCCCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 545812
Query 162661 CTTCTCTATGGTAACAACATCATCTCTGGTGC 162692
|| || ||||| ||||| || || ||||||||
Sbjct 545811 CTACTTTATGGAAACAATATTATTTCTGGTGC 545780
>seq51
Length=2912257
Score = 82.4 bits (90), Expect = 8e-11
Identities = 126/177 (71%), Gaps = 2/177 (1%)
Strand=Plus/Minus
Query 163063 GTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTT-GTTACTTCTTCTCTTAT 163121
|||| | | || || | || ||||||||||| |||| |||| || |||||| | | ||
Sbjct 983419 GTATCCAGCGGCTCCTTATTCAGTGCTATGCATGGTT-TCTTAGTAACTTCTAATTTGAT 983361
Query 163122 CAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGA 163181
||||||||| | | | || || || | |||| || |||| ||||| ||||
Sbjct 983360 CAGAGAAACCATAAAAAATGAATCTACTAATGAATGTTACAAATTCGATCAAGAGAAAGA 983301
Query 163182 GACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGC 163238
| ||| || | ||| ||||||||||| || |||| | | ||||||||| | |||||
Sbjct 983300 AATTTATAATAATGTAGCTGCTCATGGTTATTTTGATAGATTGATCTTCTAATATGC 983244
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 553033280150880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |