Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq61 100 2e-16 seq1022 87.8 2e-12 seq403 87.8 2e-12 seq616 84.2 2e-11 >seq61 Length=2804743 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||||||||| |||||| | || || |||||||| || ||| || ||| Sbjct 1592885 ATGCAAATATTTGTGAAAACACTCACTGGGAAAACCATCACGTTGGAAGTAGAGAGTTCG 1592944 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | ||| |||||| |||||||||||| | || |||||| Sbjct 1592945 GACACCATAGACAATGTGAAGGCAAAAATTCAAGACAAAGAGGGAATCCCGCCAGATCAG 1593004 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 |||||| | |||||||| || ||||| | |||||| || |||| |||||||| Sbjct 1593005 CAGAGATTAATCTTTGCTGGTAAACAGATTGAAGATGGCCGTACGTTGGCTGATTATAAT 1593064 Query 28734 ATTCAAAAAGAATCTACT 28751 || ||||| ||||| ||| Sbjct 1593065 ATCCAAAAGGAATCAACT 1593082 >seq1022 Length=319891 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 28668 GATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 28727 ||||| |||||| | || ||||| || ||||||||||||||| || ||| |||| ||| Sbjct 175617 GATCAGCAGAGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTAGAACCCTGGCTGAT 175676 Query 28728 TATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAG 28768 || ||||| || || || || ||||| ||| |||| ||||| Sbjct 175677 TACAACATCCAGAAGGAGTCAACTCTTCACCTGGTTTTAAG 175717 >seq403 Length=1096870 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||||||||| |||||| | || || ||| |||| || ||| || ||| Sbjct 1091627 ATGCAAATATTTGTGAAAACACTCACTGGGAAAGCCATCACGTTGGAAGTAGAGAGTTCG 1091568 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGT-AGATCA 28672 || || | | | || | ||| |||||| ||||||||||| | | || |||||| Sbjct 1091567 GATACCATAGACAATGTGAAGGCAAAAATTCAAGACAAAGAGGG-GATCTTGTCAGATCA 1091509 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 |||||| | |||||||| || ||||| | |||||| || |||| |||||||| Sbjct 1091508 GCAGAGATTAATCTTTGCTGGTAAACAGCTTGAAGATGGCCGTACGTTGGCTGATTATAA 1091449 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 || ||||| ||||| ||| | || |||| Sbjct 1091448 TATCCAAAAGGAATCAACTTTACATTTGGT 1091419 >seq616 Length=741428 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || || || || || || || || || || ||| ||| Sbjct 398048 ATGCAGATTTTTGTGAAGACCTTGACTGGGAAGACGATCACTCTGGAGGTCGAAAGTTCC 397989 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | ||| ||||||| ||||| |||||| | || ||||| Sbjct 397988 GATACAATTGACAATGTGAAGGCAAAAATCCAGGACAAGGAGGGAATTCCACCGGATCAG 397929 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||||||||||||||| || || || | || ||| | || | || ||||||||| Sbjct 397928 CAGAGACTTATCTTTGCTGGGAAGCAGCTAGAGGATGGGAGGACCCTCGCGGATTATAAC 397869 Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757 ||||| || || || ||||||||| Sbjct 397868 ATTCAGAAGGAGTCCACTCTGCAC 397845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425366164204308