Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq345 459 8e-125 seq43 412 1e-110 seq404 352 9e-93 >seq345 Length=1218342 Score = 459 bits (508), Expect = 8e-125 Identities = 655/911 (72%), Gaps = 16/911 (2%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||||||||||||||| || ||||||||||| | |||||||| Sbjct 657178 AGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 657237 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||| | ||| | | |||||||| ||| | || || ||| | | | ||||| Sbjct 657238 AGCACGGTTAATAATATCAGCCCAGGTATTAATTACATGACCTTGACTATCAACTACA-- 657295 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 ||||||||||| ||||| |||| || || ||| |||||||| || || | || | Sbjct 657296 -GATTGGTTGAAATTGAAATCATTTAGGTTGAAAACCATAGTGCTAATACCTAAAGCAAT 657354 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070 | ||| || | || ||| ||| ||| ||||||||||| | | | ||||| Sbjct 657355 GAACCAAATACCTACTACAGGCAAAGTAGCTAAGAAGAAATGCAAAAAACGAGAGTTGTT 657414 Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130 | |||||||| |||||||| | || ||||| || |||||||| || || |||||||| Sbjct 657415 GGAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATA 657474 Query 18131 CGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTC 18190 || ||||| ||||| || ||| | || || | || ||| ||| || || ||||| Sbjct 657475 AGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTC 657534 Query 18191 TCTAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACC 18247 || || || | |||| || |||| || ||||||||| ||||| | || || Sbjct 657535 CCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAGCCGCC 657591 Query 18248 GAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTG 18307 |||||| || || || || | ||| || || || ||||||||||| ||||| || || || Sbjct 657592 GAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTG 657651 Query 18308 GAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACT 18367 |||||| | ||| || ||||||||||| || || ||||||||||||||||| || || Sbjct 657652 GAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCT 657711 Query 18368 CCCTTGTCCAAAAGGATAAA-CGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAA 18425 || || |||| ||||||| | ||||| || | || | |||||||| || || || ||| Sbjct 657712 TCCCTGACCAATTGGATAAATCAAGAAA-ACAGCAGTA-GCAGCTGCAACAGGAGCTGAA 657769 Query 18426 TAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCC 18485 || |||||| |||||| ||||||||||| | | ||||||||||||| | || ||| Sbjct 657770 TATGCAACAGCAATCCAAGGGCGCATACCCAAACGGAAACTAAGTTCCCACTCACGACCC 657829 Query 18486 ATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTA 18545 |||||| || | || | | ||||| | ||||| || | ||| || || || || Sbjct 657830 ATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTG 657889 Query 18546 TATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCG 18605 |||||||| || || | || ||| |||||||| |||||||| || || | ||| || || Sbjct 657890 TATAACCATTCATCAACGGATGCCGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCT 657949 Query 18606 TTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAG 18665 |||| | || | || || || || || || ||||||||||| |||| | || || Sbjct 657950 GTAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCTAGAA 658009 Query 18666 ACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAAT 18725 ||||| |||||||||||||| || || || ||||| ||||||| || | || | |||| Sbjct 658010 ACAGGTTCACGAATACCATCAATATCTACTGGAGGGGCAGCAATGAAAGAGATAATAAAT 658069 Query 18726 GCTGTAGCTGC 18736 | | || ||| Sbjct 658070 ACAGAAGTTGC 658080 >seq43 Length=3080068 Score = 412 bits (456), Expect = 1e-110 Identities = 546/748 (73%), Gaps = 10/748 (1%) Strand=Plus/Plus Query 17952 GATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTA 18011 ||||||||||| ||||| ||||| || || |||||||||||| || || | || || Sbjct 2030431 GATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTG 2030490 Query 18012 AGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTA 18071 | ||| || | || ||||||||||| | ||||||||||| | | ||||| Sbjct 2030491 AACCAAATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTG 2030550 Query 18072 AAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATAC 18131 || |||||||| |||||||| | || ||||| || |||||||| || || |||||||| Sbjct 2030551 AAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAA 2030610 Query 18132 GTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCT 18191 || ||||| ||||| || ||| | || || | || ||| ||| || || ||||| Sbjct 2030611 GTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCC 2030670 Query 18192 CTAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCG 18248 || || || | |||| || |||| || ||||||||| ||||| | || ||| Sbjct 2030671 CTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAGCCGCCG 2030727 Query 18249 AATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGG 18308 ||||| || || || || | ||| || || || ||||||||||| ||||| || || ||| Sbjct 2030728 AATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGG 2030787 Query 18309 AATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTC 18368 ||||| | ||| || ||||||||||| || || ||||||||||||||||| || || Sbjct 2030788 AATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTT 2030847 Query 18369 CCTTGTCCAAAAGGATAAA-CGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAAT 18426 || || |||| ||||||| | ||||| || | || | |||||||| || || || |||| Sbjct 2030848 CCCTGACCAATTGGATAAATCAAGAAA-ACAGCAGTA-GCAGCTGCAACAGGAGCTGAAT 2030905 Query 18427 AAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCA 18486 | |||||| |||||| ||||||||||| || | ||||||||||||| | || |||| Sbjct 2030906 ATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCA 2030965 Query 18487 TGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTAT 18546 ||||| || | || | | ||||| || ||||| || | ||| || | || |||| Sbjct 2030966 TGTAACAAGCTACACCAAGTAAGAAGTGTAAAACAATTAGCTCATAAGGACTGCCATTAT 2031025 Query 18547 ATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGT 18606 ||||||| || || | || ||| |||||||| |||||||| || || | ||| || || Sbjct 2031026 ATAACCATTCATCAACGGATGCCGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCCG 2031085 Query 18607 TAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGA 18666 ||| | || | || || || || || || ||||||||||| |||| | ||| || | Sbjct 2031086 CAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAA 2031145 Query 18667 CAGGCTCACGAATACCATCTATGTCAAC 18694 |||| |||||||||||||| || || || Sbjct 2031146 CAGGTTCACGAATACCATCAATATCTAC 2031173 >seq404 Length=1096556 Score = 352 bits (390), Expect = 9e-93 Identities = 475/650 (73%), Gaps = 16/650 (2%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||||||||||||||| || ||||||||||| | |||||||| Sbjct 543774 AGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 543833 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||| | ||| | | |||||||| ||| | || | ||| | | | ||||| Sbjct 543834 AGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACA-- 543891 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 ||||||||||| ||||| ||||| || || |||||||||||| || || | || || Sbjct 543892 -GATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGT 543950 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070 ||||| || | | ||||||||||| | ||||||||||| | | ||||| Sbjct 543951 GAGCCAAATACCTACTTCAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTT 544010 Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130 || |||||||| |||||||| | || ||||| || |||||||| || || |||||||| Sbjct 544011 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATA 544070 Query 18131 CGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTC 18190 || ||||| ||||| || ||| | || || | || ||| ||| || || ||||| Sbjct 544071 AGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTC 544130 Query 18191 TCTAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACC 18247 || || || | |||| || |||| || ||||||||| ||||| | || || Sbjct 544131 CCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAGCCGCC 544187 Query 18248 GAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTG 18307 |||||| || || || || | ||| || || || ||||||||||| ||||| || || || Sbjct 544188 GAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTG 544247 Query 18308 GAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACT 18367 |||||| | ||| || ||||||||||| || || ||||||||||||||||| || || Sbjct 544248 GAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCT 544307 Query 18368 CCCTTGTCCAAAAGGATAAA-CGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAA 18425 || || |||| ||||||| | ||||| || | || | |||| ||| || ||||| ||| Sbjct 544308 TCCCTGACCAATTGGATAAATCAAGAAA-ACAGCAGTA-GCAGTTGCAACAGGTGCTGAA 544365 Query 18426 TAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCA 18475 || |||| | |||||| ||||||||||| | | ||||||||||||| Sbjct 544366 TATGCAATAGTAATCCAAGGGCGCATACCCAAACGGAAACTAAGTTCCCA 544415 Score = 111 bits (122), Expect = 5e-20 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 18623 TGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACC 18682 ||| || || || || ||||||||||| |||| | ||| || ||||| ||||||||||| Sbjct 545779 TGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACC 545838 Query 18683 ATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAA 18742 ||| || || || ||||| ||||||| || || || | |||| | | || |||||| || Sbjct 545839 ATCAATATCTACCGGAGGGGCAGCAATGAAAGCGATAATAAATACAGAAGTTGCGGTCAA 545898 Query 18743 AAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTA 18781 | | ||||||||| | || |||||||| || | ||| Sbjct 545899 TAAAGTAGGGATCATCAAAACACCAAACCATCCAATGTA 545937 Score = 93.3 bits (102), Expect = 1e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 18674 ACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGC 18733 |||||||||||| || || || ||||| ||||||| || || || | |||| | | || Sbjct 545938 ACGAATACCATCAATATCTACCGGAGGGGCAGCAATGAAAGCGATAATAAATACAGAAGT 545997 Query 18734 TGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTTGTT 18793 |||||| || | | ||||||||| | || |||||||| || | ||| || ||||| | Sbjct 545998 TGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTC 546057 Query 18794 TGTACTCGTAACCCAGTCACATAAAC 18819 || || || | ||||| ||| |||| Sbjct 546058 AGTGCTGGTTATCCAGTTACAGAAAC 546083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151305009456488