Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq345 479 8e-131 seq43 423 6e-114 seq404 390 3e-104 seq1475 84.2 6e-12 >seq345 Length=1218342 Score = 479 bits (530), Expect = 8e-131 Identities = 640/890 (72%), Gaps = 0/890 (0%) Strand=Plus/Plus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || ||||| || |||||||| || || || || |||||||| || || | |||||||| Sbjct 657179 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 657238 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 |||||||||| ||| ||||||||||| || || || || || | | | | | | |||| Sbjct 657239 GCACGGTTAATAATATCAGCCCAGGTATTAATTACATGACCTTGACTATCAACTACAGAT 657298 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650 ||||| || |||||| |||| | ||||||| |||| || | || | ||| ||| Sbjct 657299 TGGTTGAAATTGAAATCATTTAGGTTGAAAACCATAGTGCTAATACCTAAAGCAATGAAC 657358 Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAG 21710 ||||||||||| |||||| | | ||| | |||||||| | | ||| || || || | Sbjct 657359 CAAATACCTACTACAGGCAAAGTAGCTAAGAAGAAATGCAAAAAACGAGAGTTGTTGGAA 657418 Query 21711 CTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTC 21770 ||||||||||||||||| | || |||||||| || |||||||| || ||||| ||||| Sbjct 657419 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTT 657478 Query 21771 TCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGA 21830 |||||||||||||| || ||||||| | || || | | ||| || || || | Sbjct 657479 TCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 657538 Query 21831 ATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACG 21890 || | || || |||| | ||| ||||||||| ||| | || || ||||| Sbjct 657539 ATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 657598 Query 21891 CCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACC 21950 || || || || | ||||||||| || |||||||| || ||||||||||||||||| || Sbjct 657599 CCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACA 657658 Query 21951 AGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGT 22010 | ||| ||||||| || || || || || | |||||| |||||||||| ||||| Sbjct 657659 ATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCCTGA 657718 Query 22011 CCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACA 22070 |||| ||||||| | ||| |||||||| ||||| || |||||||| || || |||||| Sbjct 657719 CCAATTGGATAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACA 657778 Query 22071 AAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCA 22130 ||||| || | ||| || | || | |||||||||||||| || ||||||||| | Sbjct 657779 GCAATCCAAGGGCGCATACCCAAACGGAAACTAAGTTCCCACTCACGACCCATGTAACAA 657838 Query 22131 AAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCAT 22190 || |||| | |||||| | || | || | | |||||||| ||||| | |||| Sbjct 657839 GCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCAT 657898 Query 22191 TCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTC 22250 ||||||| | || |||||||| |||||||| || || | || || || || | Sbjct 657899 TCATCAACGGATGCCGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCTGTAGAAGTA 657958 Query 22251 GGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCT 22310 |||| | ||| || || || || ||||| ||||| | || || | || || ||||| Sbjct 657959 GGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCTAGAAACAGGTTCA 658018 Query 22311 CGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAA 22360 || || ||||| || || || || || || ||| || | ||||||||| Sbjct 658019 CGAATACCATCAATATCTACTGGAGGGGCAGCAATGAAAGAGATAATAAA 658068 >seq43 Length=3080068 Score = 423 bits (468), Expect = 6e-114 Identities = 540/744 (73%), Gaps = 0/744 (0%) Strand=Plus/Plus Query 21587 AGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGC 21646 ||||||||| || ||||||||||| | |||||||||||| || | || | |||| Sbjct 2030430 AGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGT 2030489 Query 21647 AAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATT 21706 |||||||||||||| |||||||| ||||| || |||||||| | | ||| || || || Sbjct 2030490 GAACCAAATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTT 2030549 Query 21707 AAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTA 21766 || ||||||||||||||||| | || |||||||| || |||||||| || ||||| || Sbjct 2030550 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATA 2030609 Query 21767 AGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTC 21826 ||| |||||||||||||| || ||||||| | || || | | ||| || || || Sbjct 2030610 AGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTC 2030669 Query 21827 ACGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAA 21886 | || | || || |||| | ||| ||||||||| ||| | || || || Sbjct 2030670 CCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAA 2030729 Query 21887 TACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAA 21946 ||| || || || || | ||||||||| || |||||||| || ||||||||||||||||| Sbjct 2030730 TACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAA 2030789 Query 21947 CACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCC 22006 || | ||| ||||||| || || || || || | |||||| |||||||||| || Sbjct 2030790 TACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCC 2030849 Query 22007 CTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGC 22066 ||| |||| ||||||| | ||| |||||||| ||||| || |||||||| || || || Sbjct 2030850 CTGACCAATTGGATAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGC 2030909 Query 22067 AACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTA 22126 |||| ||||| || | ||| || || || | |||||||||||||| || |||||||| Sbjct 2030910 AACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTA 2030969 Query 22127 AGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAG 22186 | | || |||| | |||||| || || | || | | |||| ||| || || | Sbjct 2030970 ACAAGCTACACCAAGTAAGAAGTGTAAAACAATTAGCTCATAAGGACTGCCATTATATAA 2031029 Query 22187 CCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACT 22246 ||||||||||| | || |||||||| |||||||| || || | || || || | Sbjct 2031030 CCATTCATCAACGGATGCCGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCCGCAGA 2031089 Query 22247 GCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGG 22306 | |||| | ||| || || || || ||||| ||||| | || || |||| || || Sbjct 2031090 AGTAGGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGG 2031149 Query 22307 TTCTCGGATTCCATCGATGTCAAC 22330 ||| || || ||||| || || || Sbjct 2031150 TTCACGAATACCATCAATATCTAC 2031173 >seq404 Length=1096556 Score = 390 bits (432), Expect = 3e-104 Identities = 525/728 (72%), Gaps = 2/728 (0%) Strand=Plus/Plus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || ||||| || |||||||| || || || || |||||||| || || | |||||||| Sbjct 543775 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 543834 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 |||||||||| ||| ||||||||||| || || || | || | | | | | | |||| Sbjct 543835 GCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACAGAT 543894 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650 ||||| || ||||||||||| | |||||||||||| || | || | |||| | | Sbjct 543895 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTGAGC 543954 Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAG 21710 ||||||||||| ||||||| ||||| || |||||||| | | ||| || || || || Sbjct 543955 CAAATACCTACTTCAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTGAAA 544014 Query 21711 CTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTC 21770 ||||||||||||||||| | || |||||||| || |||||||| || ||||| ||||| Sbjct 544015 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTT 544074 Query 21771 TCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGA 21830 |||||||||||||| || ||||||| | || || | | ||| || || || | Sbjct 544075 TCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 544134 Query 21831 ATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACG 21890 || | || || |||| | ||| ||||||||| ||| | || || ||||| Sbjct 544135 ATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 544194 Query 21891 CCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACC 21950 || || || || | ||||||||| || |||||||| || ||||||||||||||||| || Sbjct 544195 CCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACA 544254 Query 21951 AGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGT 22010 | ||| ||||||| || || || || || | |||||| |||||||||| ||||| Sbjct 544255 ATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCCTGA 544314 Query 22011 CCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACA 22070 |||| ||||||| | ||| |||||||| |||| || ||||| || || || |||| | Sbjct 544315 CCAATTGGATAAATCAAGAAAACAGCAGTAGCAGTTGCAACAGGTGCTGAATATGCAATA 544374 Query 22071 AAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCA 22130 ||||| || | ||| || | || | ||||||||||||| | || || | Sbjct 544375 GTAATCCAAGGGCGCATACCCAAACGGAAACTAAGTTCCCACT-TATATATATATATATA 544433 Query 22131 AAGA-CGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCA 22189 | | | |||| | |||||| | || | || | | |||||||| ||||| | ||| Sbjct 544434 TATATCACCAAGTAAGAAGTGTAGAACAATTAGCTTATAAGGACCGCCATTGTATAACCA 544493 Query 22190 TTCATCAA 22197 |||||||| Sbjct 544494 TTCATCAA 544501 >seq1475 Length=110218 Score = 84.2 bits (92), Expect = 6e-12 Identities = 105/142 (74%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 21588 GATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCA 21647 |||| ||| || | |||||||| | |||||||||||| || | || | ||| Sbjct 47254 GATTAGTTGAAATCAAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAATG 47195 Query 21648 AACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATG--AAGACTACGGGAATTAT 21705 |||||||||||||| | |||||| |||| | | ||||||| ||||| | || || | Sbjct 47194 AACCAAATACCTACTATAGGCCAAGCAGATATAGAGAAATGTGAAGACA--GAGAGTTGT 47137 Query 21706 TAAAGCTAGCATATTGGAAGAT 21727 | || ||||||||||||||||| Sbjct 47136 TGAAACTAGCATATTGGAAGAT 47115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146195061688560