Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq262 138 1e-27 seq3681 132 6e-26 seq3123 132 6e-26 seq320 91.5 2e-13 seq73 87.8 2e-12 >seq262 Length=1443145 Score = 138 bits (152), Expect = 1e-27 Identities = 284/423 (67%), Gaps = 12/423 (3%) Strand=Plus/Plus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCC 175290 ||| | || || ||||| ||| | || ||||||| || | ||| || || || Sbjct 905230 GAGGTAGTTGAGTTTCTGAAGAAGCCGGAGAGATTCACTGCAGTTGGGGCTCGCATTCCA 905289 Query 175291 CGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATC 175350 ||| | |||||| | ||| ||||| || |||||||| || || ||| ||||| Sbjct 905290 AAAGGTGTCCTTCTTGTTGGTCCTCCAGGAACCGGAAAGACTCTTCTAGCCAAGGCCATT 905349 Query 175351 GCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTT 175410 || |||||| | ||| ||||| || |||| | | ||||| ||||||||| Sbjct 905350 GCTGGTGAAGCTGGTGTTCCATTTTTCTCCATATCTGGTTCTGAGTTTGTTGAGATGTTT 905409 Query 175411 GTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCA 175470 |||||||| |||||| ||||| || |||||||| | | ||| |||||| || Sbjct 905410 GTTGGTGTTGGTGCCTCTAGGGTCCGTGATCTCTTCAAGAAGGCCAAAGAAAATGCTCCT 905469 Query 175471 TGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACG------CAGCGCTGGT 175524 || ||||| || | ||||| |||||||| || || | |||| | | || |||| Sbjct 905470 TGCATTGTATTTGTGGATGAAATTGATGCTGTTGGAAGGCAAAGAGGTACCGGCATTGGT 905529 Query 175525 GGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGAT 175584 || || |||||| || |||||||| || |||| || || | || || |||||| Sbjct 905530 GG------AGGAAATGATGAAAGAGAACAGACCCTTAACCAGCTTTTGACAGAAATGGAT 905583 Query 175585 GGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTT 175644 || ||||| | | ||||| || | || ||||| || |||||| | | || || || Sbjct 905584 GGTTTTGAGGGTAACACTGGTATCATTGTCATTGCAGCTACTAATAGGGCAGACATTCTA 905643 Query 175645 GAT 175647 ||| Sbjct 905644 GAT 905646 >seq3681 Length=11741 Score = 132 bits (146), Expect = 6e-26 Identities = 282/420 (67%), Gaps = 6/420 (1%) Strand=Plus/Minus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCC 175290 ||| |||| || ||||||||| | || ||||||| || | ||| || || || Sbjct 6945 GAGGTTGTTGAGTTTCTCAAGAAGCCAGAGAGATTCACTGCAGTTGGGGCTCGCATTCCA 6886 Query 175291 CGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATC 175350 ||| | ||||| | ||| ||||| || |||||||| || || ||| ||||| Sbjct 6885 AAAGGTGTTCTTCTTGTTGGTCCTCCAGGAACTGGAAAGACTCTTCTAGCCAAGGCCATT 6826 Query 175351 GCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTT 175410 || |||||| | ||| ||||| || |||| | | ||||| ||||||||| Sbjct 6825 GCTGGTGAAGCTGGTGTTCCATTTTTCTCCATATCTGGTTCTGAATTTGTTGAGATGTTT 6766 Query 175411 GTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCA 175470 |||||||| |||||| || || || ||||| || | | ||| || ||| || Sbjct 6765 GTTGGTGTTGGTGCCTCTAGAGTCCGTGATCTTTTCAAGAAGGCCAAAGATAATGCTCCT 6706 Query 175471 TGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGT 175527 || ||||| || | ||||| |||||||| || || | |||| | | |||| |||| Sbjct 6705 TGCATTGTATTTGTGGATGAAATTGATGCTGTTGGAAGGCAAAGAGGTACTGGCATTGGT 6646 Query 175528 ATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGC 175587 || |||||| || |||||||| || |||| || || | || || |||||||| Sbjct 6645 ---GGAGGAAATGATGAAAGAGAACAGACCCTTAACCAGCTTTTGACAGAAATGGATGGT 6589 Query 175588 TTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGAT 175647 ||||| | | ||||| || | || ||||| || |||||| | | || || || ||| Sbjct 6588 TTTGAGGGTAACACTGGTATCATTGTCATTGCAGCAACTAATAGGGCAGACATTCTAGAT 6529 >seq3123 Length=17441 Score = 132 bits (146), Expect = 6e-26 Identities = 282/420 (67%), Gaps = 6/420 (1%) Strand=Plus/Plus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCC 175290 ||| |||| || ||||||||| | || ||||||| || | ||| || || || Sbjct 4137 GAGGTTGTTGAGTTTCTCAAGAAGCCAGAGAGATTCACTGCAGTTGGGGCTCGCATTCCA 4196 Query 175291 CGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATC 175350 ||| | ||||| | ||| ||||| || |||||||| || || ||| ||||| Sbjct 4197 AAAGGTGTTCTTCTTGTTGGTCCTCCAGGAACTGGAAAGACTCTTCTAGCCAAGGCCATT 4256 Query 175351 GCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTT 175410 || |||||| | ||| ||||| || |||| | | ||||| ||||||||| Sbjct 4257 GCTGGTGAAGCTGGTGTTCCATTTTTCTCCATATCTGGTTCTGAATTTGTTGAGATGTTT 4316 Query 175411 GTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCA 175470 |||||||| |||||| || || || ||||| || | | ||| || ||| || Sbjct 4317 GTTGGTGTTGGTGCCTCTAGAGTCCGTGATCTTTTCAAGAAGGCCAAAGATAATGCTCCT 4376 Query 175471 TGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGT 175527 || ||||| || | ||||| |||||||| || || | |||| | | |||| |||| Sbjct 4377 TGCATTGTATTTGTGGATGAAATTGATGCTGTTGGAAGGCAAAGAGGTACTGGCATTGGT 4436 Query 175528 ATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGC 175587 || |||||| || |||||||| || |||| || || | || || |||||||| Sbjct 4437 ---GGAGGAAATGATGAAAGAGAACAGACCCTTAACCAGCTTTTGACAGAAATGGATGGT 4493 Query 175588 TTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGAT 175647 ||||| | | ||||| || | || ||||| || |||||| | | || || || ||| Sbjct 4494 TTTGAGGGTAACACTGGTATCATTGTCATTGCAGCAACTAATAGGGCAGACATTCTAGAT 4553 >seq320 Length=1281786 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 75136 TGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGCTCGATGG 75195 ||| | || ||||||||| ||||||| ||||||| | ||| ||| | | |||| Sbjct 82372 TGACTATGATTACTTTGGCTTCAAAACTCTTGAGAGGTCCTACCTTTTGAAGGTTAATGG 82313 Query 75196 CATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGA 75255 | | | |||| ||||| ||||||| ||| |||| || | || |||||| || Sbjct 82312 GAAAATTGTAGAAAGACCACAACACATGTTGATGAGGGTTGCTGTTGGTATCCACAAAGA 82253 Query 75256 AGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGC 75315 |||||||| || || | | |||||| || |||||| || || ||||| || || Sbjct 82252 TGACATTGACTCCGTTGTCAAAACATACTACTTGATGTCTCAGCGTTGGTTCACACATGC 82193 Query 75316 AACACCAACCCTCTTCAATGCTGGTACACC 75345 || || || || ||||||||||| ||||| Sbjct 82192 TACCCCTACGCTTTTCAATGCTGGAACACC 82163 >seq73 Length=2663303 Score = 87.8 bits (96), Expect = 2e-12 Identities = 225/338 (67%), Gaps = 10/338 (3%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || || || |||||||| | || |||| | || || || || || ||||| Sbjct 1642782 CCTGGAACAGGGAAGACCCTGTTGGCTAGAGCTGTTGCTGGAGAGGCAGGAGTGCCATTT 1642841 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || ||| | || | | ||||||||| |||| || || || || || ||| || Sbjct 1642842 TTCTCTTGCGCGGCATCGGAGTTTGTGGAGTTGTTCGTGGGAGTTGGGGCATCAAGAGTG 1642901 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 | ||| | ||||| | ||| | || || || ||||| || |||||||||||| Sbjct 1642902 AGAGATTTGTTTGAGAAAGCCAAGGCGAAGGCTCCGTGCATTGTATTTATTGATGAGATT 1642961 Query 175495 GATGCGGTGGGCAAGC--AACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAAC 175552 ||||| ||||| | || | | |||| | | | | | | |||||| |||||||| | Sbjct 1642962 GATGCCGTGGGAAGGCAGAGAGGAGCGGGGCTTGGAGG--TGGAAATGATGAGAGAGAGC 1643019 Query 175553 AAACAATTAATCAACTACTCACCGAGATGGATGGCTTT---GACAATGAGACTGGCATTG 175609 ||||||||||||| | | || || |||||||| ||| | |||| | || || | Sbjct 1643020 AAACAATTAATCAGTTGTTGACTGAAATGGATGGGTTTTCGGGCAATTCGGGTGTTATAG 1643079 Query 175610 TGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGAT 175647 | |||| || ||||||||| | ||| | |||||| Sbjct 1643080 T-GTTA--GCTGCCACTAATAGACCTGATGTTCTTGAT 1643114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596514029541760